Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00915 and HSERO_RS00920 are separated by 22 nucleotides HSERO_RS00920 and HSERO_RS00925 are separated by 322 nucleotides HSERO_RS00925 and HSERO_RS00930 are separated by 519 nucleotides
HSERO_RS00915: HSERO_RS00915 - ATP-dependent protease, at 192,695 to 194,041
_RS00915
HSERO_RS00920: HSERO_RS00920 - hypothetical protein, at 194,064 to 194,267
_RS00920
HSERO_RS00925: HSERO_RS00925 - porin, at 194,590 to 195,762
_RS00925
HSERO_RS00930: HSERO_RS00930 - hypothetical protein, at 196,282 to 197,823
_RS00930
Position (kb) 194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 193.597 kb on + strand, within HSERO_RS00915 at 193.605 kb on - strand, within HSERO_RS00915 at 193.643 kb on - strand, within HSERO_RS00915 at 193.645 kb on + strand, within HSERO_RS00915 at 193.653 kb on - strand, within HSERO_RS00915 at 193.661 kb on - strand, within HSERO_RS00915 at 193.779 kb on - strand, within HSERO_RS00915 at 193.825 kb on + strand, within HSERO_RS00915 at 193.901 kb on - strand, within HSERO_RS00915 at 193.941 kb on + strand at 193.960 kb on - strand at 193.960 kb on - strand at 193.988 kb on - strand at 194.099 kb on + strand, within HSERO_RS00920 at 194.145 kb on - strand, within HSERO_RS00920 at 194.152 kb on - strand, within HSERO_RS00920 at 194.219 kb on - strand, within HSERO_RS00920 at 194.221 kb on + strand, within HSERO_RS00920 at 194.369 kb on - strand at 194.405 kb on - strand at 194.417 kb on - strand at 194.501 kb on + strand at 194.501 kb on + strand at 194.507 kb on - strand at 194.509 kb on - strand at 194.531 kb on - strand at 194.559 kb on + strand at 194.916 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.949 kb on - strand, within HSERO_RS00925 at 194.992 kb on + strand at 195.033 kb on - strand, within HSERO_RS00925 at 195.139 kb on + strand, within HSERO_RS00925 at 195.147 kb on - strand, within HSERO_RS00925 at 195.220 kb on - strand, within HSERO_RS00925 at 195.230 kb on - strand, within HSERO_RS00925 at 195.313 kb on + strand, within HSERO_RS00925 at 195.313 kb on + strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.321 kb on - strand, within HSERO_RS00925 at 195.607 kb on - strand, within HSERO_RS00925 at 195.694 kb on - strand at 195.964 kb on - strand at 196.005 kb on + strand at 196.039 kb on - strand at 196.039 kb on - strand at 196.316 kb on - strand at 196.402 kb on - strand at 196.486 kb on - strand, within HSERO_RS00930 at 196.488 kb on + strand, within HSERO_RS00930 at 196.595 kb on + strand, within HSERO_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 193,597 + HSERO_RS00915 0.67 +0.4 193,605 - HSERO_RS00915 0.68 +0.9 193,643 - HSERO_RS00915 0.70 -0.7 193,645 + HSERO_RS00915 0.71 +0.3 193,653 - HSERO_RS00915 0.71 -0.5 193,661 - HSERO_RS00915 0.72 -0.0 193,779 - HSERO_RS00915 0.80 -0.4 193,825 + HSERO_RS00915 0.84 -0.4 193,901 - HSERO_RS00915 0.90 +0.7 193,941 + +1.0 193,960 - -0.0 193,960 - -0.0 193,988 - -1.0 194,099 + HSERO_RS00920 0.17 +0.3 194,145 - HSERO_RS00920 0.40 -0.3 194,152 - HSERO_RS00920 0.43 -0.8 194,219 - HSERO_RS00920 0.76 -0.5 194,221 + HSERO_RS00920 0.77 +0.0 194,369 - -0.3 194,405 - -0.1 194,417 - +0.2 194,501 + -0.6 194,501 + -3.6 194,507 - -0.6 194,509 - -2.2 194,531 - +0.4 194,559 + -0.2 194,916 - HSERO_RS00925 0.28 -2.9 194,949 - HSERO_RS00925 0.31 -1.3 194,949 - HSERO_RS00925 0.31 -1.1 194,992 + +0.5 195,033 - HSERO_RS00925 0.38 -1.6 195,139 + HSERO_RS00925 0.47 -1.9 195,147 - HSERO_RS00925 0.47 -0.8 195,220 - HSERO_RS00925 0.54 -2.7 195,230 - HSERO_RS00925 0.55 -3.1 195,313 + HSERO_RS00925 0.62 -1.8 195,313 + HSERO_RS00925 0.62 -1.6 195,321 - HSERO_RS00925 0.62 -1.7 195,321 - HSERO_RS00925 0.62 -1.2 195,607 - HSERO_RS00925 0.87 -1.5 195,694 - -0.4 195,964 - +0.0 196,005 + -0.8 196,039 - +0.3 196,039 - -0.7 196,316 - -1.5 196,402 - +0.8 196,486 - HSERO_RS00930 0.13 +0.5 196,488 + HSERO_RS00930 0.13 -1.0 196,595 + HSERO_RS00930 0.20 -0.2
Or see this region's nucleotide sequence