Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00230 and HSERO_RS00235 are separated by 284 nucleotides HSERO_RS00235 and HSERO_RS00240 are separated by 187 nucleotides
HSERO_RS00230: HSERO_RS00230 - hypothetical protein, at 60,124 to 60,444
_RS00230
HSERO_RS00235: HSERO_RS00235 - MFS transporter, at 60,729 to 62,000
_RS00235
HSERO_RS00240: HSERO_RS00240 - LysR family transcription regulator protein, at 62,188 to 63,078
_RS00240
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.935 kb on + strand at 60.241 kb on + strand, within HSERO_RS00230 at 60.708 kb on + strand at 60.896 kb on - strand, within HSERO_RS00235 at 60.954 kb on + strand, within HSERO_RS00235 at 61.089 kb on + strand, within HSERO_RS00235 at 61.128 kb on + strand, within HSERO_RS00235 at 61.236 kb on - strand, within HSERO_RS00235 at 61.591 kb on - strand, within HSERO_RS00235 at 61.640 kb on + strand, within HSERO_RS00235 at 61.648 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.809 kb on - strand, within HSERO_RS00235 at 61.817 kb on + strand, within HSERO_RS00235 at 61.833 kb on - strand, within HSERO_RS00235 at 62.028 kb on + strand at 62.053 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.174 kb on + strand at 62.182 kb on - strand at 62.182 kb on - strand at 62.300 kb on - strand, within HSERO_RS00240 at 62.364 kb on + strand, within HSERO_RS00240 at 62.407 kb on - strand, within HSERO_RS00240 at 62.562 kb on + strand, within HSERO_RS00240 at 62.746 kb on + strand, within HSERO_RS00240 at 62.871 kb on + strand, within HSERO_RS00240 at 62.907 kb on - strand, within HSERO_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 59,935 + -0.3 60,241 + HSERO_RS00230 0.36 +0.8 60,708 + -0.3 60,896 - HSERO_RS00235 0.13 -0.0 60,954 + HSERO_RS00235 0.18 +0.2 61,089 + HSERO_RS00235 0.28 +0.1 61,128 + HSERO_RS00235 0.31 +0.6 61,236 - HSERO_RS00235 0.40 -0.0 61,591 - HSERO_RS00235 0.68 -0.3 61,640 + HSERO_RS00235 0.72 -0.3 61,648 - HSERO_RS00235 0.72 +2.0 61,809 - HSERO_RS00235 0.85 -0.3 61,809 - HSERO_RS00235 0.85 -0.2 61,817 + HSERO_RS00235 0.86 -1.8 61,833 - HSERO_RS00235 0.87 -1.5 62,028 + -0.9 62,053 + -0.4 62,174 + -0.8 62,174 + -0.4 62,174 + +0.5 62,182 - +0.1 62,182 - -0.0 62,300 - HSERO_RS00240 0.13 -1.4 62,364 + HSERO_RS00240 0.20 -0.8 62,407 - HSERO_RS00240 0.25 -0.8 62,562 + HSERO_RS00240 0.42 -2.5 62,746 + HSERO_RS00240 0.63 +0.4 62,871 + HSERO_RS00240 0.77 -0.7 62,907 - HSERO_RS00240 0.81 +1.1
Or see this region's nucleotide sequence