Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26400

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26390 and BPHYT_RS26395 are separated by 373 nucleotidesBPHYT_RS26395 and BPHYT_RS26400 overlap by 4 nucleotidesBPHYT_RS26400 and BPHYT_RS26405 are separated by 318 nucleotides BPHYT_RS26390: BPHYT_RS26390 - antibiotic resistance protein, at 1,493,940 to 1,494,617 _RS26390 BPHYT_RS26395: BPHYT_RS26395 - membrane protein, at 1,494,991 to 1,495,206 _RS26395 BPHYT_RS26400: BPHYT_RS26400 - sodium:solute symporter, at 1,495,203 to 1,496,675 _RS26400 BPHYT_RS26405: BPHYT_RS26405 - glycogen synthase, at 1,496,994 to 1,498,583 _RS26405 Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1494.617 kb on + strandat 1494.777 kb on + strandat 1494.857 kb on - strandat 1494.928 kb on + strandat 1494.964 kb on + strandat 1494.964 kb on + strandat 1495.450 kb on - strand, within BPHYT_RS26400at 1495.707 kb on + strand, within BPHYT_RS26400at 1495.815 kb on + strand, within BPHYT_RS26400at 1496.247 kb on + strand, within BPHYT_RS26400at 1496.573 kb on + strandat 1496.696 kb on + strandat 1496.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,494,617 + +2.1
1,494,777 + +2.6
1,494,857 - +1.9
1,494,928 + +3.4
1,494,964 + +3.2
1,494,964 + +0.7
1,495,450 - BPHYT_RS26400 0.17 -3.4
1,495,707 + BPHYT_RS26400 0.34 -3.7
1,495,815 + BPHYT_RS26400 0.42 -2.2
1,496,247 + BPHYT_RS26400 0.71 -0.3
1,496,573 + -2.5
1,496,696 + +0.2
1,496,828 - +1.1

Or see this region's nucleotide sequence