Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26390 and BPHYT_RS26395 are separated by 373 nucleotides BPHYT_RS26395 and BPHYT_RS26400 overlap by 4 nucleotides BPHYT_RS26400 and BPHYT_RS26405 are separated by 318 nucleotides
BPHYT_RS26390: BPHYT_RS26390 - antibiotic resistance protein, at 1,493,940 to 1,494,617
_RS26390
BPHYT_RS26395: BPHYT_RS26395 - membrane protein, at 1,494,991 to 1,495,206
_RS26395
BPHYT_RS26400: BPHYT_RS26400 - sodium:solute symporter, at 1,495,203 to 1,496,675
_RS26400
BPHYT_RS26405: BPHYT_RS26405 - glycogen synthase, at 1,496,994 to 1,498,583
_RS26405
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1494.617 kb on + strand at 1494.777 kb on + strand at 1494.857 kb on - strand at 1494.928 kb on + strand at 1494.964 kb on + strand at 1494.964 kb on + strand at 1495.450 kb on - strand, within BPHYT_RS26400 at 1495.707 kb on + strand, within BPHYT_RS26400 at 1495.815 kb on + strand, within BPHYT_RS26400 at 1496.247 kb on + strand, within BPHYT_RS26400 at 1496.573 kb on + strand at 1496.696 kb on + strand at 1496.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,494,617 + +2.1 1,494,777 + +2.6 1,494,857 - +1.9 1,494,928 + +3.4 1,494,964 + +3.2 1,494,964 + +0.7 1,495,450 - BPHYT_RS26400 0.17 -3.4 1,495,707 + BPHYT_RS26400 0.34 -3.7 1,495,815 + BPHYT_RS26400 0.42 -2.2 1,496,247 + BPHYT_RS26400 0.71 -0.3 1,496,573 + -2.5 1,496,696 + +0.2 1,496,828 - +1.1
Or see this region's nucleotide sequence