Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26370

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26365 and BPHYT_RS26370 are separated by 130 nucleotidesBPHYT_RS26370 and BPHYT_RS26375 are separated by 321 nucleotides BPHYT_RS26365: BPHYT_RS26365 - oxidoreductase molybdopterin subunit, at 1,486,104 to 1,488,470 _RS26365 BPHYT_RS26370: BPHYT_RS26370 - porin, at 1,488,601 to 1,489,686 _RS26370 BPHYT_RS26375: BPHYT_RS26375 - ATPase AAA, at 1,490,008 to 1,491,237 _RS26375 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -1 0 1at 1487.932 kb on - strand, within BPHYT_RS26365at 1488.348 kb on + strandat 1488.789 kb on - strand, within BPHYT_RS26370at 1488.851 kb on + strand, within BPHYT_RS26370at 1488.894 kb on - strand, within BPHYT_RS26370at 1488.894 kb on - strand, within BPHYT_RS26370at 1488.959 kb on + strand, within BPHYT_RS26370at 1488.980 kb on - strand, within BPHYT_RS26370at 1489.112 kb on + strand, within BPHYT_RS26370at 1489.629 kb on - strandat 1489.631 kb on - strandat 1489.631 kb on - strandat 1489.824 kb on - strandat 1489.824 kb on - strandat 1489.824 kb on - strandat 1489.942 kb on + strandat 1489.943 kb on - strandat 1490.050 kb on + strandat 1490.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,487,932 - BPHYT_RS26365 0.77 +0.6
1,488,348 + -0.8
1,488,789 - BPHYT_RS26370 0.17 +0.7
1,488,851 + BPHYT_RS26370 0.23 +1.0
1,488,894 - BPHYT_RS26370 0.27 +1.3
1,488,894 - BPHYT_RS26370 0.27 +0.6
1,488,959 + BPHYT_RS26370 0.33 +0.1
1,488,980 - BPHYT_RS26370 0.35 +1.0
1,489,112 + BPHYT_RS26370 0.47 +0.0
1,489,629 - -0.1
1,489,631 - +1.3
1,489,631 - +0.7
1,489,824 - +0.6
1,489,824 - +1.7
1,489,824 - +0.6
1,489,942 + +1.3
1,489,943 - +1.1
1,490,050 + +0.3
1,490,051 - +0.0

Or see this region's nucleotide sequence