Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25975 and BPHYT_RS25980 overlap by 4 nucleotides BPHYT_RS25980 and BPHYT_RS25985 are separated by 11 nucleotides BPHYT_RS25985 and BPHYT_RS25990 are separated by 30 nucleotides BPHYT_RS25990 and BPHYT_RS25995 are separated by 424 nucleotides
BPHYT_RS25975: BPHYT_RS25975 - urea carboxylase, at 1,403,003 to 1,406,614
_RS25975
BPHYT_RS25980: BPHYT_RS25980 - urea carboxylase, at 1,406,611 to 1,407,267
_RS25980
BPHYT_RS25985: BPHYT_RS25985 - urea carboxylase, at 1,407,279 to 1,408,034
_RS25985
BPHYT_RS25990: BPHYT_RS25990 - hypothetical protein, at 1,408,065 to 1,408,265
_RS25990
BPHYT_RS25995: BPHYT_RS25995 - 2OG-Fe(II) oxygenase, at 1,408,690 to 1,409,745
_RS25995
Position (kb) 1407
1408
1409 Strain fitness (log2 ratio) -1
0
1 at 1406.905 kb on - strand, within BPHYT_RS25980 at 1408.061 kb on - strand at 1408.488 kb on - strand at 1408.559 kb on - strand at 1408.612 kb on + strand at 1408.768 kb on + strand at 1408.769 kb on - strand at 1408.769 kb on - strand at 1408.799 kb on + strand, within BPHYT_RS25995 at 1408.913 kb on + strand, within BPHYT_RS25995
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,406,905 - BPHYT_RS25980 0.45 +0.0 1,408,061 - +0.4 1,408,488 - -0.2 1,408,559 - +0.2 1,408,612 + +0.0 1,408,768 + -0.2 1,408,769 - -0.6 1,408,769 - -0.4 1,408,799 + BPHYT_RS25995 0.10 +0.4 1,408,913 + BPHYT_RS25995 0.21 +0.6
Or see this region's nucleotide sequence