Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25055

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25050 and BPHYT_RS25055 are separated by 101 nucleotidesBPHYT_RS25055 and BPHYT_RS25060 are separated by 130 nucleotides BPHYT_RS25050: BPHYT_RS25050 - 3-isopropylmalate dehydrogenase, at 1,189,900 to 1,191,030 _RS25050 BPHYT_RS25055: BPHYT_RS25055 - MFS transporter, at 1,191,132 to 1,192,427 _RS25055 BPHYT_RS25060: BPHYT_RS25060 - membrane protein, at 1,192,558 to 1,193,688 _RS25060 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -1 0 1at 1190.312 kb on - strand, within BPHYT_RS25050at 1191.132 kb on - strandat 1191.456 kb on - strand, within BPHYT_RS25055at 1191.513 kb on + strand, within BPHYT_RS25055at 1191.514 kb on - strand, within BPHYT_RS25055at 1191.910 kb on - strand, within BPHYT_RS25055at 1192.338 kb on + strandat 1192.338 kb on + strandat 1192.339 kb on - strandat 1192.484 kb on + strandat 1192.504 kb on + strandat 1192.585 kb on + strandat 1192.868 kb on - strand, within BPHYT_RS25060

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,190,312 - BPHYT_RS25050 0.36 -0.6
1,191,132 - -0.7
1,191,456 - BPHYT_RS25055 0.25 +0.7
1,191,513 + BPHYT_RS25055 0.29 +0.8
1,191,514 - BPHYT_RS25055 0.29 +0.4
1,191,910 - BPHYT_RS25055 0.60 +0.2
1,192,338 + +0.9
1,192,338 + +0.2
1,192,339 - +0.5
1,192,484 + +0.5
1,192,504 + +0.3
1,192,585 + +0.6
1,192,868 - BPHYT_RS25060 0.27 +0.1

Or see this region's nucleotide sequence