Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21870

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21865 and BPHYT_RS21870 are separated by 572 nucleotidesBPHYT_RS21870 and BPHYT_RS21875 are separated by 11 nucleotides BPHYT_RS21865: BPHYT_RS21865 - chemotaxis protein, at 459,304 to 459,729 _RS21865 BPHYT_RS21870: BPHYT_RS21870 - hypothetical protein, at 460,302 to 460,760 _RS21870 BPHYT_RS21875: BPHYT_RS21875 - hypothetical protein, at 460,772 to 462,049 _RS21875 Position (kb) 460 461Strain fitness (log2 ratio) -2 -1 0 1 2at 459.699 kb on + strandat 459.800 kb on - strandat 459.871 kb on - strandat 459.881 kb on - strandat 459.929 kb on + strandat 459.930 kb on - strandat 460.109 kb on - strandat 460.317 kb on + strandat 460.451 kb on + strand, within BPHYT_RS21870at 460.464 kb on + strand, within BPHYT_RS21870at 460.512 kb on + strand, within BPHYT_RS21870at 460.710 kb on + strand, within BPHYT_RS21870at 460.780 kb on + strandat 460.780 kb on + strandat 460.781 kb on - strandat 461.015 kb on + strand, within BPHYT_RS21875at 461.288 kb on + strand, within BPHYT_RS21875at 461.288 kb on + strand, within BPHYT_RS21875at 461.289 kb on - strand, within BPHYT_RS21875at 461.289 kb on - strand, within BPHYT_RS21875at 461.435 kb on + strand, within BPHYT_RS21875at 461.436 kb on - strand, within BPHYT_RS21875at 461.507 kb on + strand, within BPHYT_RS21875at 461.693 kb on + strand, within BPHYT_RS21875at 461.705 kb on - strand, within BPHYT_RS21875

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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459,699 + -1.8
459,800 - +0.5
459,871 - -0.2
459,881 - -0.3
459,929 + -0.5
459,930 - -0.2
460,109 - -0.4
460,317 + +1.4
460,451 + BPHYT_RS21870 0.32 +1.3
460,464 + BPHYT_RS21870 0.35 +1.5
460,512 + BPHYT_RS21870 0.46 -0.8
460,710 + BPHYT_RS21870 0.89 -0.3
460,780 + +1.0
460,780 + +0.3
460,781 - +0.3
461,015 + BPHYT_RS21875 0.19 -0.1
461,288 + BPHYT_RS21875 0.40 +2.7
461,288 + BPHYT_RS21875 0.40 -0.1
461,289 - BPHYT_RS21875 0.40 +0.0
461,289 - BPHYT_RS21875 0.40 -0.6
461,435 + BPHYT_RS21875 0.52 -1.2
461,436 - BPHYT_RS21875 0.52 -0.3
461,507 + BPHYT_RS21875 0.58 +1.2
461,693 + BPHYT_RS21875 0.72 +0.8
461,705 - BPHYT_RS21875 0.73 -1.9

Or see this region's nucleotide sequence