Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21715 and BPHYT_RS21720 overlap by 8 nucleotides BPHYT_RS21720 and BPHYT_RS21725 are separated by 33 nucleotides BPHYT_RS21725 and BPHYT_RS21730 are separated by 345 nucleotides
BPHYT_RS21715: BPHYT_RS21715 - taurine ABC transporter permease, at 428,227 to 429,147
_RS21715
BPHYT_RS21720: BPHYT_RS21720 - nitrate ABC transporter ATP-binding protein, at 429,140 to 429,955
_RS21720
BPHYT_RS21725: BPHYT_RS21725 - taurine ABC transporter substrate-binding protein, at 429,989 to 431,023
_RS21725
BPHYT_RS21730: BPHYT_RS21730 - 2-aminoadipate aminotransferase, at 431,369 to 432,895
_RS21730
Position (kb) 429
430
431
432 Strain fitness (log2 ratio) -1
0
1 at 429.135 kb on + strand at 429.189 kb on + strand at 429.298 kb on + strand, within BPHYT_RS21720 at 429.298 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.739 kb on + strand, within BPHYT_RS21720 at 429.985 kb on + strand at 430.017 kb on + strand at 430.018 kb on - strand at 430.163 kb on - strand, within BPHYT_RS21725 at 430.908 kb on + strand, within BPHYT_RS21725 at 431.050 kb on + strand at 431.062 kb on + strand at 431.214 kb on - strand at 431.223 kb on + strand at 431.223 kb on + strand at 431.223 kb on + strand at 431.594 kb on + strand, within BPHYT_RS21730 at 431.860 kb on + strand, within BPHYT_RS21730 at 431.861 kb on - strand, within BPHYT_RS21730
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 429,135 + -0.4 429,189 + -0.4 429,298 + BPHYT_RS21720 0.19 +0.5 429,298 + BPHYT_RS21720 0.19 +0.1 429,552 + BPHYT_RS21720 0.50 -0.2 429,552 + BPHYT_RS21720 0.50 -0.0 429,552 + BPHYT_RS21720 0.50 +0.6 429,739 + BPHYT_RS21720 0.73 +0.4 429,985 + +0.6 430,017 + -0.0 430,018 - -0.1 430,163 - BPHYT_RS21725 0.17 +0.6 430,908 + BPHYT_RS21725 0.89 +0.8 431,050 + +0.2 431,062 + +0.1 431,214 - -0.0 431,223 + -0.1 431,223 + -0.6 431,223 + +0.0 431,594 + BPHYT_RS21730 0.15 +0.3 431,860 + BPHYT_RS21730 0.32 +0.9 431,861 - BPHYT_RS21730 0.32 -0.0
Or see this region's nucleotide sequence