Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21660 and BPHYT_RS21665 are separated by 12 nucleotides BPHYT_RS21665 and BPHYT_RS21670 are separated by 283 nucleotides BPHYT_RS21670 and BPHYT_RS21675 are separated by 49 nucleotides BPHYT_RS21675 and BPHYT_RS21680 are separated by 269 nucleotides
BPHYT_RS21660: BPHYT_RS21660 - sodium:solute symporter, at 414,298 to 415,683
_RS21660
BPHYT_RS21665: BPHYT_RS21665 - hypothetical protein, at 415,696 to 415,905
_RS21665
BPHYT_RS21670: BPHYT_RS21670 - transcriptional regulator, at 416,189 to 416,599
_RS21670
BPHYT_RS21675: BPHYT_RS21675 - FAD-dependent oxidoreductase, at 416,649 to 418,028
_RS21675
BPHYT_RS21680: BPHYT_RS21680 - amino acid permease-associated protein, at 418,298 to 419,728
_RS21680
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.698 kb on - strand at 415.800 kb on - strand, within BPHYT_RS21665 at 415.872 kb on - strand, within BPHYT_RS21665 at 415.968 kb on - strand at 416.166 kb on + strand at 416.746 kb on - strand at 417.597 kb on + strand, within BPHYT_RS21675 at 417.600 kb on + strand, within BPHYT_RS21675 at 417.601 kb on - strand, within BPHYT_RS21675 at 417.822 kb on + strand, within BPHYT_RS21675 at 417.823 kb on - strand, within BPHYT_RS21675 at 417.825 kb on + strand, within BPHYT_RS21675 at 417.826 kb on - strand, within BPHYT_RS21675 at 417.993 kb on + strand at 417.993 kb on + strand at 417.994 kb on - strand at 417.994 kb on - strand at 417.994 kb on - strand at 418.310 kb on - strand at 418.310 kb on - strand at 418.538 kb on + strand at 418.538 kb on + strand, within BPHYT_RS21680 at 418.607 kb on + strand, within BPHYT_RS21680 at 418.758 kb on - strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.833 kb on - strand, within BPHYT_RS21680 at 418.833 kb on - strand, within BPHYT_RS21680
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 415,698 - +1.0 415,800 - BPHYT_RS21665 0.50 -0.9 415,872 - BPHYT_RS21665 0.84 -0.0 415,968 - +0.1 416,166 + -0.5 416,746 - -1.3 417,597 + BPHYT_RS21675 0.69 -2.7 417,600 + BPHYT_RS21675 0.69 -1.3 417,601 - BPHYT_RS21675 0.69 -1.5 417,822 + BPHYT_RS21675 0.85 -2.9 417,823 - BPHYT_RS21675 0.85 -1.3 417,825 + BPHYT_RS21675 0.85 -0.8 417,826 - BPHYT_RS21675 0.85 -0.7 417,993 + -2.7 417,993 + -1.3 417,994 - -0.9 417,994 - -0.7 417,994 - -1.2 418,310 - -0.7 418,310 - -0.3 418,538 + +0.2 418,538 + BPHYT_RS21680 0.17 +0.2 418,607 + BPHYT_RS21680 0.22 +0.1 418,758 - BPHYT_RS21680 0.32 -0.4 418,832 + BPHYT_RS21680 0.37 -0.4 418,832 + BPHYT_RS21680 0.37 +0.0 418,832 + BPHYT_RS21680 0.37 +0.6 418,833 - BPHYT_RS21680 0.37 +2.0 418,833 - BPHYT_RS21680 0.37 +0.1
Or see this region's nucleotide sequence