Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20920

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20915 and BPHYT_RS20920 are separated by 11 nucleotidesBPHYT_RS20920 and BPHYT_RS20925 are separated by 400 nucleotides BPHYT_RS20915: BPHYT_RS20915 - hypothetical protein, at 254,427 to 255,434 _RS20915 BPHYT_RS20920: BPHYT_RS20920 - oxidoreductase, at 255,446 to 255,991 _RS20920 BPHYT_RS20925: BPHYT_RS20925 - dimethylallyltransferase, at 256,392 to 257,069 _RS20925 Position (kb) 255 256Strain fitness (log2 ratio) -1 0 1 2at 254.707 kb on + strand, within BPHYT_RS20915at 255.056 kb on - strand, within BPHYT_RS20915at 255.607 kb on - strand, within BPHYT_RS20920at 255.607 kb on - strand, within BPHYT_RS20920at 255.618 kb on + strand, within BPHYT_RS20920at 255.836 kb on + strand, within BPHYT_RS20920at 255.837 kb on - strand, within BPHYT_RS20920at 255.837 kb on - strand, within BPHYT_RS20920at 256.216 kb on + strandat 256.304 kb on + strandat 256.775 kb on - strand, within BPHYT_RS20925at 256.775 kb on - strand, within BPHYT_RS20925at 256.775 kb on - strand, within BPHYT_RS20925at 256.976 kb on - strand, within BPHYT_RS20925

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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254,707 + BPHYT_RS20915 0.28 +0.7
255,056 - BPHYT_RS20915 0.62 +0.2
255,607 - BPHYT_RS20920 0.29 +1.8
255,607 - BPHYT_RS20920 0.29 -0.1
255,618 + BPHYT_RS20920 0.32 +2.4
255,836 + BPHYT_RS20920 0.71 +0.4
255,837 - BPHYT_RS20920 0.72 +0.4
255,837 - BPHYT_RS20920 0.72 +0.3
256,216 + +0.7
256,304 + +0.6
256,775 - BPHYT_RS20925 0.56 -0.2
256,775 - BPHYT_RS20925 0.56 -0.4
256,775 - BPHYT_RS20925 0.56 -1.5
256,976 - BPHYT_RS20925 0.86 -0.5

Or see this region's nucleotide sequence