Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07425 and BPHYT_RS07430 are separated by 149 nucleotides BPHYT_RS07430 and BPHYT_RS07435 are separated by 105 nucleotides BPHYT_RS07435 and BPHYT_RS07440 are separated by 97 nucleotides
BPHYT_RS07425: BPHYT_RS07425 - hypothetical protein, at 1,687,932 to 1,688,723
_RS07425
BPHYT_RS07430: BPHYT_RS07430 - LuxR family transcriptional regulator, at 1,688,873 to 1,690,348
_RS07430
BPHYT_RS07435: BPHYT_RS07435 - amino acid transporter, at 1,690,454 to 1,691,071
_RS07435
BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062
_RS07440
Position (kb)
1688
1689
1690
1691 Strain fitness (log2 ratio)
-1
0
1 at 1688.010 kb on - strand at 1688.099 kb on - strand, within BPHYT_RS07425 at 1688.360 kb on - strand, within BPHYT_RS07425 at 1688.718 kb on - strand at 1688.718 kb on - strand at 1688.723 kb on + strand at 1688.724 kb on - strand at 1688.724 kb on - strand at 1688.872 kb on + strand at 1688.872 kb on + strand at 1688.872 kb on + strand at 1688.872 kb on + strand at 1688.873 kb on - strand at 1689.213 kb on + strand, within BPHYT_RS07430 at 1689.214 kb on - strand, within BPHYT_RS07430 at 1689.245 kb on - strand, within BPHYT_RS07430 at 1689.818 kb on + strand, within BPHYT_RS07430 at 1690.680 kb on + strand, within BPHYT_RS07435 at 1690.833 kb on + strand, within BPHYT_RS07435
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,688,010 - -0.0 1,688,099 - BPHYT_RS07425 0.21 +1.4 1,688,360 - BPHYT_RS07425 0.54 +0.2 1,688,718 - +0.4 1,688,718 - +1.1 1,688,723 + +1.1 1,688,724 - +1.4 1,688,724 - -0.8 1,688,872 + -0.6 1,688,872 + -0.3 1,688,872 + +0.1 1,688,872 + -0.1 1,688,873 - +1.1 1,689,213 + BPHYT_RS07430 0.23 +0.8 1,689,214 - BPHYT_RS07430 0.23 +0.8 1,689,245 - BPHYT_RS07430 0.25 -0.3 1,689,818 + BPHYT_RS07430 0.64 +1.2 1,690,680 + BPHYT_RS07435 0.37 -1.1 1,690,833 + BPHYT_RS07435 0.61 +0.2
Or see this region's nucleotide sequence