Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07430

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07425 and BPHYT_RS07430 are separated by 149 nucleotidesBPHYT_RS07430 and BPHYT_RS07435 are separated by 105 nucleotidesBPHYT_RS07435 and BPHYT_RS07440 are separated by 97 nucleotides BPHYT_RS07425: BPHYT_RS07425 - hypothetical protein, at 1,687,932 to 1,688,723 _RS07425 BPHYT_RS07430: BPHYT_RS07430 - LuxR family transcriptional regulator, at 1,688,873 to 1,690,348 _RS07430 BPHYT_RS07435: BPHYT_RS07435 - amino acid transporter, at 1,690,454 to 1,691,071 _RS07435 BPHYT_RS07440: BPHYT_RS07440 - LysR family transcriptional regulator, at 1,691,169 to 1,692,062 _RS07440 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -1 0 1at 1688.010 kb on - strandat 1688.099 kb on - strand, within BPHYT_RS07425at 1688.360 kb on - strand, within BPHYT_RS07425at 1688.718 kb on - strandat 1688.718 kb on - strandat 1688.723 kb on + strandat 1688.724 kb on - strandat 1688.724 kb on - strandat 1688.872 kb on + strandat 1688.872 kb on + strandat 1688.872 kb on + strandat 1688.872 kb on + strandat 1688.873 kb on - strandat 1689.213 kb on + strand, within BPHYT_RS07430at 1689.214 kb on - strand, within BPHYT_RS07430at 1689.245 kb on - strand, within BPHYT_RS07430at 1689.818 kb on + strand, within BPHYT_RS07430at 1690.680 kb on + strand, within BPHYT_RS07435at 1690.833 kb on + strand, within BPHYT_RS07435

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,688,010 - -0.0
1,688,099 - BPHYT_RS07425 0.21 +1.4
1,688,360 - BPHYT_RS07425 0.54 +0.2
1,688,718 - +0.4
1,688,718 - +1.1
1,688,723 + +1.1
1,688,724 - +1.4
1,688,724 - -0.8
1,688,872 + -0.6
1,688,872 + -0.3
1,688,872 + +0.1
1,688,872 + -0.1
1,688,873 - +1.1
1,689,213 + BPHYT_RS07430 0.23 +0.8
1,689,214 - BPHYT_RS07430 0.23 +0.8
1,689,245 - BPHYT_RS07430 0.25 -0.3
1,689,818 + BPHYT_RS07430 0.64 +1.2
1,690,680 + BPHYT_RS07435 0.37 -1.1
1,690,833 + BPHYT_RS07435 0.61 +0.2

Or see this region's nucleotide sequence