Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07305

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS07300 and BPHYT_RS07305 are separated by 85 nucleotidesBPHYT_RS07305 and BPHYT_RS07310 are separated by 8 nucleotidesBPHYT_RS07310 and BPHYT_RS07315 are separated by 205 nucleotides BPHYT_RS07300: BPHYT_RS07300 - porin, at 1,656,911 to 1,657,936 _RS07300 BPHYT_RS07305: BPHYT_RS07305 - hydroxyacid dehydrogenase, at 1,658,022 to 1,658,966 _RS07305 BPHYT_RS07310: BPHYT_RS07310 - glyoxalase, at 1,658,975 to 1,659,403 _RS07310 BPHYT_RS07315: BPHYT_RS07315 - lipase, at 1,659,609 to 1,660,565 _RS07315 Position (kb) 1658 1659Strain fitness (log2 ratio) -1 0 1at 1657.197 kb on + strand, within BPHYT_RS07300at 1657.198 kb on - strand, within BPHYT_RS07300at 1657.239 kb on + strand, within BPHYT_RS07300at 1657.555 kb on - strand, within BPHYT_RS07300at 1658.413 kb on + strand, within BPHYT_RS07305at 1658.884 kb on + strandat 1658.884 kb on + strandat 1658.885 kb on - strandat 1658.885 kb on - strandat 1658.953 kb on + strandat 1658.953 kb on + strandat 1658.954 kb on - strandat 1659.090 kb on + strand, within BPHYT_RS07310at 1659.090 kb on + strand, within BPHYT_RS07310at 1659.129 kb on + strand, within BPHYT_RS07310at 1659.130 kb on - strand, within BPHYT_RS07310at 1659.292 kb on - strand, within BPHYT_RS07310at 1659.292 kb on - strand, within BPHYT_RS07310at 1659.292 kb on - strand, within BPHYT_RS07310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
1,657,197 + BPHYT_RS07300 0.28 +0.2
1,657,198 - BPHYT_RS07300 0.28 -0.1
1,657,239 + BPHYT_RS07300 0.32 +0.2
1,657,555 - BPHYT_RS07300 0.63 +0.1
1,658,413 + BPHYT_RS07305 0.41 +0.5
1,658,884 + -0.5
1,658,884 + -0.0
1,658,885 - -0.5
1,658,885 - +1.1
1,658,953 + +0.5
1,658,953 + +0.1
1,658,954 - -0.3
1,659,090 + BPHYT_RS07310 0.27 +0.2
1,659,090 + BPHYT_RS07310 0.27 -0.2
1,659,129 + BPHYT_RS07310 0.36 +0.3
1,659,130 - BPHYT_RS07310 0.36 -0.6
1,659,292 - BPHYT_RS07310 0.74 -0.3
1,659,292 - BPHYT_RS07310 0.74 -0.4
1,659,292 - BPHYT_RS07310 0.74 -0.1

Or see this region's nucleotide sequence