Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23365

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23360 and AO356_23365 are separated by 1 nucleotidesAO356_23365 and AO356_23370 are separated by 123 nucleotides AO356_23360: AO356_23360 - diguanylate cyclase, at 5,238,818 to 5,240,161 _23360 AO356_23365: AO356_23365 - amino acid ABC transporter substrate-binding protein, at 5,240,163 to 5,240,921 _23365 AO356_23370: AO356_23370 - aldo/keto reductase, at 5,241,045 to 5,242,040 _23370 Position (kb) 5240 5241Strain fitness (log2 ratio) -1 0 1 2at 5239.167 kb on + strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.179 kb on + strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.275 kb on + strand, within AO356_23360at 5239.537 kb on + strand, within AO356_23360at 5239.570 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.702 kb on + strand, within AO356_23360at 5239.944 kb on + strand, within AO356_23360at 5240.166 kb on + strandat 5240.167 kb on - strandat 5240.191 kb on + strandat 5240.192 kb on - strandat 5240.362 kb on + strand, within AO356_23365at 5240.362 kb on + strand, within AO356_23365at 5240.362 kb on + strand, within AO356_23365at 5240.363 kb on - strand, within AO356_23365at 5240.422 kb on + strand, within AO356_23365at 5240.422 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.434 kb on + strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.435 kb on - strand, within AO356_23365at 5240.489 kb on - strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.581 kb on + strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.582 kb on - strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.587 kb on + strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.588 kb on - strand, within AO356_23365at 5240.645 kb on + strand, within AO356_23365at 5240.659 kb on + strand, within AO356_23365at 5240.659 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.809 kb on + strand, within AO356_23365at 5240.810 kb on - strand, within AO356_23365at 5240.969 kb on - strandat 5240.971 kb on + strandat 5240.971 kb on + strandat 5240.971 kb on + strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.972 kb on - strandat 5240.977 kb on + strandat 5240.978 kb on - strandat 5240.978 kb on - strandat 5241.185 kb on - strand, within AO356_23370at 5241.465 kb on - strand, within AO356_23370at 5241.673 kb on + strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.674 kb on - strand, within AO356_23370at 5241.676 kb on + strand, within AO356_23370at 5241.676 kb on + strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.677 kb on - strand, within AO356_23370at 5241.688 kb on + strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.689 kb on - strand, within AO356_23370at 5241.808 kb on + strand, within AO356_23370at 5241.808 kb on + strand, within AO356_23370at 5241.809 kb on - strand, within AO356_23370at 5241.809 kb on - strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.871 kb on + strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370at 5241.872 kb on - strand, within AO356_23370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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5,239,167 + AO356_23360 0.26 -1.2
5,239,168 - AO356_23360 0.26 +0.0
5,239,168 - AO356_23360 0.26 +0.1
5,239,168 - AO356_23360 0.26 -0.6
5,239,179 + AO356_23360 0.27 -0.8
5,239,180 - AO356_23360 0.27 +0.3
5,239,180 - AO356_23360 0.27 +0.1
5,239,180 - AO356_23360 0.27 -0.4
5,239,275 + AO356_23360 0.34 -1.2
5,239,537 + AO356_23360 0.53 +0.9
5,239,570 + AO356_23360 0.56 -0.5
5,239,699 + AO356_23360 0.66 -0.0
5,239,699 + AO356_23360 0.66 +0.1
5,239,700 - AO356_23360 0.66 -0.7
5,239,700 - AO356_23360 0.66 -0.7
5,239,702 + AO356_23360 0.66 +0.3
5,239,944 + AO356_23360 0.84 -1.2
5,240,166 + +0.5
5,240,167 - +1.4
5,240,191 + +0.3
5,240,192 - +0.4
5,240,362 + AO356_23365 0.26 +0.2
5,240,362 + AO356_23365 0.26 +0.5
5,240,362 + AO356_23365 0.26 +1.0
5,240,363 - AO356_23365 0.26 +0.6
5,240,422 + AO356_23365 0.34 -0.0
5,240,422 + AO356_23365 0.34 +0.4
5,240,434 + AO356_23365 0.36 -0.5
5,240,434 + AO356_23365 0.36 -0.1
5,240,434 + AO356_23365 0.36 +0.2
5,240,434 + AO356_23365 0.36 -0.3
5,240,435 - AO356_23365 0.36 -0.5
5,240,435 - AO356_23365 0.36 -0.6
5,240,435 - AO356_23365 0.36 -0.6
5,240,489 - AO356_23365 0.43 +1.1
5,240,581 + AO356_23365 0.55 +0.0
5,240,581 + AO356_23365 0.55 -1.2
5,240,581 + AO356_23365 0.55 -0.0
5,240,581 + AO356_23365 0.55 +0.8
5,240,582 - AO356_23365 0.55 +0.0
5,240,582 - AO356_23365 0.55 +0.3
5,240,582 - AO356_23365 0.55 -0.4
5,240,587 + AO356_23365 0.56 -0.6
5,240,587 + AO356_23365 0.56 -0.2
5,240,587 + AO356_23365 0.56 -0.2
5,240,587 + AO356_23365 0.56 +0.3
5,240,587 + AO356_23365 0.56 +0.2
5,240,587 + AO356_23365 0.56 +0.9
5,240,587 + AO356_23365 0.56 +0.6
5,240,588 - AO356_23365 0.56 -1.3
5,240,588 - AO356_23365 0.56 -0.3
5,240,588 - AO356_23365 0.56 +0.5
5,240,588 - AO356_23365 0.56 -0.1
5,240,645 + AO356_23365 0.64 +0.1
5,240,659 + AO356_23365 0.65 +0.4
5,240,659 + AO356_23365 0.65 +0.2
5,240,809 + AO356_23365 0.85 +0.1
5,240,809 + AO356_23365 0.85 -0.2
5,240,809 + AO356_23365 0.85 +0.8
5,240,809 + AO356_23365 0.85 +0.7
5,240,810 - AO356_23365 0.85 +0.6
5,240,969 - +1.0
5,240,971 + -0.2
5,240,971 + +0.5
5,240,971 + -0.3
5,240,972 - -0.0
5,240,972 - -0.2
5,240,972 - +0.1
5,240,972 - +0.6
5,240,977 + +0.4
5,240,978 - -0.3
5,240,978 - +1.2
5,241,185 - AO356_23370 0.14 +1.5
5,241,465 - AO356_23370 0.42 +0.4
5,241,673 + AO356_23370 0.63 -0.0
5,241,674 - AO356_23370 0.63 +1.2
5,241,674 - AO356_23370 0.63 -0.4
5,241,674 - AO356_23370 0.63 +0.7
5,241,676 + AO356_23370 0.63 +0.7
5,241,676 + AO356_23370 0.63 +0.9
5,241,677 - AO356_23370 0.63 +0.3
5,241,677 - AO356_23370 0.63 +0.1
5,241,677 - AO356_23370 0.63 -0.3
5,241,688 + AO356_23370 0.65 -0.8
5,241,689 - AO356_23370 0.65 +1.2
5,241,689 - AO356_23370 0.65 +1.7
5,241,689 - AO356_23370 0.65 +1.0
5,241,808 + AO356_23370 0.77 +0.4
5,241,808 + AO356_23370 0.77 -0.2
5,241,809 - AO356_23370 0.77 -0.2
5,241,809 - AO356_23370 0.77 -0.2
5,241,871 + AO356_23370 0.83 -0.0
5,241,871 + AO356_23370 0.83 +0.0
5,241,871 + AO356_23370 0.83 +0.9
5,241,871 + AO356_23370 0.83 -1.0
5,241,872 - AO356_23370 0.83 -0.5
5,241,872 - AO356_23370 0.83 -0.7
5,241,872 - AO356_23370 0.83 +1.8

Or see this region's nucleotide sequence