Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23355

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23350 and AO356_23355 are separated by 43 nucleotidesAO356_23355 and AO356_23360 are separated by 28 nucleotides AO356_23350: AO356_23350 - S-transferase, at 5,237,172 to 5,238,011 _23350 AO356_23355: AO356_23355 - ABC transporter substrate-binding protein, at 5,238,055 to 5,238,789 _23355 AO356_23360: AO356_23360 - diguanylate cyclase, at 5,238,818 to 5,240,161 _23360 Position (kb) 5238 5239Strain fitness (log2 ratio) -2 -1 0 1 2at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.305 kb on + strand, within AO356_23350at 5237.306 kb on - strand, within AO356_23350at 5237.306 kb on - strand, within AO356_23350at 5237.338 kb on + strand, within AO356_23350at 5237.338 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.340 kb on + strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.341 kb on - strand, within AO356_23350at 5237.366 kb on - strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.398 kb on + strand, within AO356_23350at 5237.399 kb on - strand, within AO356_23350at 5237.518 kb on + strand, within AO356_23350at 5237.519 kb on - strand, within AO356_23350at 5237.641 kb on + strand, within AO356_23350at 5237.641 kb on + strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350at 5237.642 kb on - strand, within AO356_23350at 5237.789 kb on - strand, within AO356_23350at 5237.789 kb on - strand, within AO356_23350at 5237.789 kb on - strand, within AO356_23350at 5237.801 kb on + strand, within AO356_23350at 5237.869 kb on + strand, within AO356_23350at 5237.870 kb on - strand, within AO356_23350at 5237.995 kb on + strandat 5237.995 kb on + strandat 5237.995 kb on + strandat 5238.005 kb on + strandat 5238.005 kb on + strandat 5238.006 kb on - strandat 5238.006 kb on - strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.019 kb on + strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.020 kb on - strandat 5238.057 kb on - strandat 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.197 kb on + strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.198 kb on - strand, within AO356_23355at 5238.362 kb on + strand, within AO356_23355at 5238.401 kb on + strand, within AO356_23355at 5238.402 kb on - strand, within AO356_23355at 5238.481 kb on + strand, within AO356_23355at 5238.481 kb on + strand, within AO356_23355at 5238.482 kb on - strand, within AO356_23355at 5238.482 kb on - strand, within AO356_23355at 5238.572 kb on + strand, within AO356_23355at 5238.690 kb on - strand, within AO356_23355at 5238.690 kb on - strand, within AO356_23355at 5238.754 kb on + strandat 5238.754 kb on + strandat 5238.755 kb on - strandat 5238.789 kb on + strandat 5238.789 kb on + strandat 5238.789 kb on + strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.790 kb on - strandat 5238.861 kb on - strandat 5238.861 kb on - strandat 5238.861 kb on - strandat 5239.042 kb on + strand, within AO356_23360at 5239.167 kb on + strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.168 kb on - strand, within AO356_23360at 5239.179 kb on + strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.180 kb on - strand, within AO356_23360at 5239.275 kb on + strand, within AO356_23360at 5239.537 kb on + strand, within AO356_23360at 5239.570 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.699 kb on + strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.700 kb on - strand, within AO356_23360at 5239.702 kb on + strand, within AO356_23360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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5,237,305 + AO356_23350 0.16 +0.8
5,237,305 + AO356_23350 0.16 -0.1
5,237,305 + AO356_23350 0.16 -1.8
5,237,305 + AO356_23350 0.16 +0.3
5,237,305 + AO356_23350 0.16 -0.8
5,237,306 - AO356_23350 0.16 -0.3
5,237,306 - AO356_23350 0.16 +1.0
5,237,338 + AO356_23350 0.20 -0.1
5,237,338 + AO356_23350 0.20 +0.7
5,237,340 + AO356_23350 0.20 -0.4
5,237,340 + AO356_23350 0.20 +0.2
5,237,340 + AO356_23350 0.20 +0.7
5,237,341 - AO356_23350 0.20 -0.8
5,237,341 - AO356_23350 0.20 -0.4
5,237,341 - AO356_23350 0.20 +0.1
5,237,341 - AO356_23350 0.20 +0.3
5,237,366 - AO356_23350 0.23 -0.8
5,237,398 + AO356_23350 0.27 +0.2
5,237,398 + AO356_23350 0.27 +0.7
5,237,398 + AO356_23350 0.27 +0.1
5,237,399 - AO356_23350 0.27 +0.9
5,237,518 + AO356_23350 0.41 +0.4
5,237,519 - AO356_23350 0.41 +0.3
5,237,641 + AO356_23350 0.56 -0.0
5,237,641 + AO356_23350 0.56 -0.6
5,237,642 - AO356_23350 0.56 +2.7
5,237,642 - AO356_23350 0.56 -0.2
5,237,642 - AO356_23350 0.56 -0.3
5,237,789 - AO356_23350 0.73 +0.4
5,237,789 - AO356_23350 0.73 -0.1
5,237,789 - AO356_23350 0.73 -0.1
5,237,801 + AO356_23350 0.75 -0.4
5,237,869 + AO356_23350 0.83 -0.5
5,237,870 - AO356_23350 0.83 +0.0
5,237,995 + -0.8
5,237,995 + +0.2
5,237,995 + -0.1
5,238,005 + +1.3
5,238,005 + +0.3
5,238,006 - -0.7
5,238,006 - +0.5
5,238,019 + +0.3
5,238,019 + -0.0
5,238,019 + +0.3
5,238,019 + +0.2
5,238,019 + +0.5
5,238,019 + +0.3
5,238,019 + +0.2
5,238,020 - -0.2
5,238,020 - +0.9
5,238,020 - -0.3
5,238,020 - -0.3
5,238,057 - +0.1
5,238,197 + AO356_23355 0.19 +0.2
5,238,197 + AO356_23355 0.19 +0.1
5,238,197 + AO356_23355 0.19 +1.3
5,238,197 + AO356_23355 0.19 -0.9
5,238,198 - AO356_23355 0.19 -0.4
5,238,198 - AO356_23355 0.19 +0.2
5,238,198 - AO356_23355 0.19 -0.6
5,238,198 - AO356_23355 0.19 +0.8
5,238,198 - AO356_23355 0.19 -0.0
5,238,198 - AO356_23355 0.19 -1.5
5,238,362 + AO356_23355 0.42 +0.2
5,238,401 + AO356_23355 0.47 +0.1
5,238,402 - AO356_23355 0.47 +0.7
5,238,481 + AO356_23355 0.58 +1.1
5,238,481 + AO356_23355 0.58 +1.2
5,238,482 - AO356_23355 0.58 +0.6
5,238,482 - AO356_23355 0.58 +0.2
5,238,572 + AO356_23355 0.70 +0.0
5,238,690 - AO356_23355 0.86 +1.0
5,238,690 - AO356_23355 0.86 +0.1
5,238,754 + -0.4
5,238,754 + +0.4
5,238,755 - +0.0
5,238,789 + +0.0
5,238,789 + +0.2
5,238,789 + +0.4
5,238,790 - +0.1
5,238,790 - +0.3
5,238,790 - +0.2
5,238,790 - +1.2
5,238,861 - +1.3
5,238,861 - +0.8
5,238,861 - -0.1
5,239,042 + AO356_23360 0.17 +0.5
5,239,167 + AO356_23360 0.26 -1.2
5,239,168 - AO356_23360 0.26 +0.0
5,239,168 - AO356_23360 0.26 +0.1
5,239,168 - AO356_23360 0.26 -0.6
5,239,179 + AO356_23360 0.27 -0.8
5,239,180 - AO356_23360 0.27 +0.3
5,239,180 - AO356_23360 0.27 +0.1
5,239,180 - AO356_23360 0.27 -0.4
5,239,275 + AO356_23360 0.34 -1.2
5,239,537 + AO356_23360 0.53 +0.9
5,239,570 + AO356_23360 0.56 -0.5
5,239,699 + AO356_23360 0.66 -0.0
5,239,699 + AO356_23360 0.66 +0.1
5,239,700 - AO356_23360 0.66 -0.7
5,239,700 - AO356_23360 0.66 -0.7
5,239,702 + AO356_23360 0.66 +0.3

Or see this region's nucleotide sequence