Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18065

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18060 and AO356_18065 are separated by 166 nucleotidesAO356_18065 and AO356_18070 are separated by 1 nucleotidesAO356_18070 and AO356_18075 are separated by 63 nucleotidesAO356_18075 and AO356_18080 are separated by 118 nucleotides AO356_18060: AO356_18060 - hypothetical protein, at 4,071,507 to 4,072,340 _18060 AO356_18065: AO356_18065 - 7-carboxy-7-deazaguanine synthase, at 4,072,507 to 4,073,154 _18065 AO356_18070: AO356_18070 - 7-cyano-7-deazaguanine synthase, at 4,073,156 to 4,073,848 _18070 AO356_18075: AO356_18075 - tRNA-Lys, at 4,073,912 to 4,073,987 _18075 AO356_18080: AO356_18080 - LysR family transcriptional regulator, at 4,074,106 to 4,075,041 _18080 Position (kb) 4072 4073 4074Strain fitness (log2 ratio) -2 -1 0 1at 4071.530 kb on - strandat 4071.530 kb on - strandat 4071.605 kb on + strand, within AO356_18060at 4071.605 kb on + strand, within AO356_18060at 4071.644 kb on + strand, within AO356_18060at 4071.658 kb on - strand, within AO356_18060at 4071.776 kb on + strand, within AO356_18060at 4071.833 kb on - strand, within AO356_18060at 4071.984 kb on + strand, within AO356_18060at 4071.984 kb on + strand, within AO356_18060at 4071.985 kb on - strand, within AO356_18060at 4071.985 kb on - strand, within AO356_18060at 4071.987 kb on + strand, within AO356_18060at 4071.988 kb on - strand, within AO356_18060at 4071.988 kb on - strand, within AO356_18060at 4071.988 kb on - strand, within AO356_18060at 4072.065 kb on + strand, within AO356_18060at 4072.066 kb on - strand, within AO356_18060at 4072.080 kb on + strand, within AO356_18060at 4072.081 kb on - strand, within AO356_18060at 4072.099 kb on - strand, within AO356_18060at 4072.176 kb on + strand, within AO356_18060at 4072.177 kb on - strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.209 kb on + strand, within AO356_18060at 4072.210 kb on - strand, within AO356_18060at 4072.210 kb on - strand, within AO356_18060at 4072.210 kb on - strand, within AO356_18060at 4072.263 kb on - strandat 4072.327 kb on + strandat 4072.328 kb on - strandat 4072.328 kb on - strandat 4072.328 kb on - strandat 4072.339 kb on - strandat 4072.339 kb on - strandat 4072.339 kb on - strandat 4072.410 kb on + strandat 4072.484 kb on + strandat 4072.506 kb on + strandat 4072.506 kb on + strandat 4072.507 kb on - strandat 4072.507 kb on - strandat 4072.637 kb on - strand, within AO356_18065at 4072.696 kb on + strand, within AO356_18065at 4072.696 kb on + strand, within AO356_18065at 4072.966 kb on + strand, within AO356_18065at 4072.966 kb on + strand, within AO356_18065at 4072.967 kb on - strand, within AO356_18065at 4073.088 kb on + strand, within AO356_18065at 4073.121 kb on + strandat 4073.121 kb on + strandat 4073.122 kb on - strandat 4073.125 kb on + strandat 4073.125 kb on + strandat 4073.126 kb on - strandat 4073.126 kb on - strandat 4073.126 kb on - strandat 4073.282 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.453 kb on + strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.454 kb on - strand, within AO356_18070at 4073.470 kb on + strand, within AO356_18070at 4073.470 kb on + strand, within AO356_18070at 4073.471 kb on - strand, within AO356_18070at 4073.471 kb on - strand, within AO356_18070at 4073.872 kb on + strandat 4073.889 kb on + strandat 4074.108 kb on - strandat 4074.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,071,530 - -0.7
4,071,530 - -1.2
4,071,605 + AO356_18060 0.12 -1.7
4,071,605 + AO356_18060 0.12 -1.8
4,071,644 + AO356_18060 0.16 -1.3
4,071,658 - AO356_18060 0.18 +0.3
4,071,776 + AO356_18060 0.32 -0.1
4,071,833 - AO356_18060 0.39 +0.1
4,071,984 + AO356_18060 0.57 -1.1
4,071,984 + AO356_18060 0.57 -1.3
4,071,985 - AO356_18060 0.57 -0.0
4,071,985 - AO356_18060 0.57 +0.5
4,071,987 + AO356_18060 0.58 +0.2
4,071,988 - AO356_18060 0.58 -0.5
4,071,988 - AO356_18060 0.58 -0.9
4,071,988 - AO356_18060 0.58 +0.5
4,072,065 + AO356_18060 0.67 -1.4
4,072,066 - AO356_18060 0.67 +0.1
4,072,080 + AO356_18060 0.69 +0.1
4,072,081 - AO356_18060 0.69 -0.2
4,072,099 - AO356_18060 0.71 -0.9
4,072,176 + AO356_18060 0.80 +0.6
4,072,177 - AO356_18060 0.80 +0.5
4,072,209 + AO356_18060 0.84 -0.5
4,072,209 + AO356_18060 0.84 -1.6
4,072,209 + AO356_18060 0.84 +0.2
4,072,209 + AO356_18060 0.84 -1.1
4,072,209 + AO356_18060 0.84 -0.4
4,072,209 + AO356_18060 0.84 -0.1
4,072,209 + AO356_18060 0.84 -0.3
4,072,210 - AO356_18060 0.84 +0.2
4,072,210 - AO356_18060 0.84 +1.3
4,072,210 - AO356_18060 0.84 +0.6
4,072,263 - -0.2
4,072,327 + +0.1
4,072,328 - +0.5
4,072,328 - +0.0
4,072,328 - -0.6
4,072,339 - +1.1
4,072,339 - +1.1
4,072,339 - -1.3
4,072,410 + -0.8
4,072,484 + +0.4
4,072,506 + -0.1
4,072,506 + -1.0
4,072,507 - -1.5
4,072,507 - -0.3
4,072,637 - AO356_18065 0.20 -0.3
4,072,696 + AO356_18065 0.29 +0.7
4,072,696 + AO356_18065 0.29 -0.1
4,072,966 + AO356_18065 0.71 -0.2
4,072,966 + AO356_18065 0.71 +0.3
4,072,967 - AO356_18065 0.71 -0.9
4,073,088 + AO356_18065 0.90 -0.3
4,073,121 + +0.1
4,073,121 + +1.3
4,073,122 - -0.9
4,073,125 + -0.2
4,073,125 + +0.7
4,073,126 - +0.4
4,073,126 - -0.2
4,073,126 - +0.3
4,073,282 + AO356_18070 0.18 +1.0
4,073,453 + AO356_18070 0.43 -0.5
4,073,453 + AO356_18070 0.43 +0.2
4,073,453 + AO356_18070 0.43 -0.2
4,073,453 + AO356_18070 0.43 -1.7
4,073,453 + AO356_18070 0.43 +1.1
4,073,453 + AO356_18070 0.43 +0.7
4,073,453 + AO356_18070 0.43 +0.1
4,073,454 - AO356_18070 0.43 +0.2
4,073,454 - AO356_18070 0.43 -0.6
4,073,454 - AO356_18070 0.43 +0.1
4,073,454 - AO356_18070 0.43 -0.5
4,073,454 - AO356_18070 0.43 +0.0
4,073,454 - AO356_18070 0.43 +0.1
4,073,470 + AO356_18070 0.45 -0.3
4,073,470 + AO356_18070 0.45 +0.1
4,073,471 - AO356_18070 0.45 +0.1
4,073,471 - AO356_18070 0.45 +1.7
4,073,872 + -0.3
4,073,889 + -0.8
4,074,108 - -0.0
4,074,108 - +0.5

Or see this region's nucleotide sequence