Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4866

Experiment: apoplastic, grinding recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4865 and Psyr_4866 are separated by 143 nucleotidesPsyr_4866 and Psyr_4867 are separated by 68 nucleotides Psyr_4865: Psyr_4865 - extracellular solute-binding protein, family 1, at 5,773,720 to 5,774,817 _4865 Psyr_4866: Psyr_4866 - Aminotransferase class-III, at 5,774,961 to 5,776,325 _4866 Psyr_4867: Psyr_4867 - L-glutamine synthetase, at 5,776,394 to 5,777,752 _4867 Position (kb) 5774 5775 5776 5777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.003 kb on + strand, within Psyr_4865at 5774.004 kb on - strand, within Psyr_4865at 5774.004 kb on - strand, within Psyr_4865at 5774.004 kb on - strand, within Psyr_4865at 5774.004 kb on - strand, within Psyr_4865at 5774.004 kb on - strand, within Psyr_4865at 5774.036 kb on + strand, within Psyr_4865at 5774.037 kb on - strand, within Psyr_4865at 5774.037 kb on - strand, within Psyr_4865at 5774.087 kb on + strand, within Psyr_4865at 5774.087 kb on + strand, within Psyr_4865at 5774.087 kb on + strand, within Psyr_4865at 5774.087 kb on + strand, within Psyr_4865at 5774.087 kb on + strand, within Psyr_4865at 5774.088 kb on - strand, within Psyr_4865at 5774.088 kb on - strand, within Psyr_4865at 5774.088 kb on - strand, within Psyr_4865at 5774.088 kb on - strand, within Psyr_4865at 5774.091 kb on + strand, within Psyr_4865at 5774.092 kb on - strand, within Psyr_4865at 5774.092 kb on - strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.147 kb on + strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.148 kb on - strand, within Psyr_4865at 5774.165 kb on + strand, within Psyr_4865at 5774.252 kb on + strand, within Psyr_4865at 5774.252 kb on + strand, within Psyr_4865at 5774.252 kb on + strand, within Psyr_4865at 5774.253 kb on - strand, within Psyr_4865at 5774.253 kb on - strand, within Psyr_4865at 5774.314 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.430 kb on + strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.431 kb on - strand, within Psyr_4865at 5774.432 kb on + strand, within Psyr_4865at 5774.432 kb on + strand, within Psyr_4865at 5774.433 kb on - strand, within Psyr_4865at 5774.433 kb on - strand, within Psyr_4865at 5774.444 kb on + strand, within Psyr_4865at 5774.444 kb on + strand, within Psyr_4865at 5774.444 kb on + strand, within Psyr_4865at 5774.444 kb on + strand, within Psyr_4865at 5774.445 kb on - strand, within Psyr_4865at 5774.445 kb on - strand, within Psyr_4865at 5774.445 kb on - strand, within Psyr_4865at 5774.452 kb on - strand, within Psyr_4865at 5774.594 kb on + strand, within Psyr_4865at 5774.654 kb on + strand, within Psyr_4865at 5774.655 kb on - strand, within Psyr_4865at 5774.711 kb on + strandat 5774.712 kb on - strandat 5774.712 kb on - strandat 5774.712 kb on - strandat 5774.712 kb on - strandat 5774.724 kb on + strandat 5774.724 kb on + strandat 5774.724 kb on + strandat 5774.725 kb on - strandat 5774.725 kb on - strandat 5774.725 kb on - strandat 5774.725 kb on - strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.726 kb on + strandat 5774.727 kb on - strandat 5774.727 kb on - strandat 5774.727 kb on - strandat 5774.821 kb on + strandat 5774.821 kb on + strandat 5774.821 kb on + strandat 5774.821 kb on + strandat 5774.821 kb on + strandat 5774.821 kb on + strandat 5774.822 kb on - strandat 5774.822 kb on - strandat 5774.832 kb on + strandat 5774.832 kb on + strandat 5774.832 kb on + strandat 5774.833 kb on - strandat 5774.833 kb on - strandat 5774.838 kb on + strandat 5775.146 kb on - strand, within Psyr_4866at 5775.259 kb on + strand, within Psyr_4866at 5775.259 kb on + strand, within Psyr_4866at 5775.259 kb on + strand, within Psyr_4866at 5775.260 kb on - strand, within Psyr_4866at 5775.260 kb on - strand, within Psyr_4866at 5775.358 kb on + strand, within Psyr_4866at 5775.359 kb on - strand, within Psyr_4866at 5775.359 kb on - strand, within Psyr_4866at 5775.359 kb on - strand, within Psyr_4866at 5775.359 kb on - strand, within Psyr_4866at 5775.359 kb on - strand, within Psyr_4866at 5775.362 kb on + strand, within Psyr_4866at 5775.362 kb on + strand, within Psyr_4866at 5775.362 kb on + strand, within Psyr_4866at 5775.438 kb on + strand, within Psyr_4866at 5775.439 kb on - strand, within Psyr_4866at 5775.439 kb on - strand, within Psyr_4866at 5775.443 kb on - strand, within Psyr_4866at 5775.443 kb on - strand, within Psyr_4866at 5775.493 kb on + strand, within Psyr_4866at 5775.494 kb on - strand, within Psyr_4866at 5775.494 kb on - strand, within Psyr_4866at 5775.521 kb on + strand, within Psyr_4866at 5775.602 kb on - strand, within Psyr_4866at 5775.763 kb on + strand, within Psyr_4866at 5775.764 kb on - strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.820 kb on + strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5775.821 kb on - strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.069 kb on + strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.070 kb on - strand, within Psyr_4866at 5776.072 kb on + strand, within Psyr_4866at 5776.073 kb on - strand, within Psyr_4866at 5776.195 kb on + strandat 5776.195 kb on + strandat 5776.195 kb on + strandat 5776.249 kb on + strandat 5776.674 kb on + strand, within Psyr_4867at 5776.674 kb on + strand, within Psyr_4867at 5776.674 kb on + strand, within Psyr_4867at 5776.930 kb on + strand, within Psyr_4867at 5776.930 kb on + strand, within Psyr_4867at 5776.930 kb on + strand, within Psyr_4867at 5777.153 kb on - strand, within Psyr_4867at 5777.187 kb on + strand, within Psyr_4867at 5777.187 kb on + strand, within Psyr_4867at 5777.188 kb on - strand, within Psyr_4867at 5777.188 kb on - strand, within Psyr_4867at 5777.188 kb on - strand, within Psyr_4867at 5777.322 kb on + strand, within Psyr_4867at 5777.323 kb on - strand, within Psyr_4867

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean
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5,774,003 + Psyr_4865 0.26 -2.0
5,774,003 + Psyr_4865 0.26 -2.6
5,774,003 + Psyr_4865 0.26 -2.0
5,774,003 + Psyr_4865 0.26 +0.8
5,774,003 + Psyr_4865 0.26 +1.9
5,774,003 + Psyr_4865 0.26 +0.7
5,774,003 + Psyr_4865 0.26 -1.9
5,774,004 - Psyr_4865 0.26 -2.8
5,774,004 - Psyr_4865 0.26 -2.4
5,774,004 - Psyr_4865 0.26 -0.3
5,774,004 - Psyr_4865 0.26 -0.8
5,774,004 - Psyr_4865 0.26 -2.1
5,774,036 + Psyr_4865 0.29 -3.0
5,774,037 - Psyr_4865 0.29 +2.1
5,774,037 - Psyr_4865 0.29 -1.8
5,774,087 + Psyr_4865 0.33 -2.4
5,774,087 + Psyr_4865 0.33 -1.7
5,774,087 + Psyr_4865 0.33 +0.2
5,774,087 + Psyr_4865 0.33 -3.2
5,774,087 + Psyr_4865 0.33 -2.1
5,774,088 - Psyr_4865 0.34 +0.5
5,774,088 - Psyr_4865 0.34 +1.2
5,774,088 - Psyr_4865 0.34 -1.3
5,774,088 - Psyr_4865 0.34 -1.3
5,774,091 + Psyr_4865 0.34 +1.3
5,774,092 - Psyr_4865 0.34 -2.5
5,774,092 - Psyr_4865 0.34 -3.1
5,774,147 + Psyr_4865 0.39 -2.2
5,774,147 + Psyr_4865 0.39 -1.4
5,774,147 + Psyr_4865 0.39 +0.3
5,774,147 + Psyr_4865 0.39 -3.6
5,774,147 + Psyr_4865 0.39 +0.7
5,774,147 + Psyr_4865 0.39 -0.8
5,774,147 + Psyr_4865 0.39 +0.6
5,774,147 + Psyr_4865 0.39 -3.5
5,774,147 + Psyr_4865 0.39 -1.0
5,774,147 + Psyr_4865 0.39 -2.6
5,774,148 - Psyr_4865 0.39 +1.4
5,774,148 - Psyr_4865 0.39 +0.5
5,774,148 - Psyr_4865 0.39 -2.0
5,774,148 - Psyr_4865 0.39 +0.0
5,774,148 - Psyr_4865 0.39 -0.6
5,774,148 - Psyr_4865 0.39 -1.4
5,774,148 - Psyr_4865 0.39 +0.9
5,774,148 - Psyr_4865 0.39 +0.6
5,774,165 + Psyr_4865 0.41 -2.5
5,774,252 + Psyr_4865 0.48 +1.2
5,774,252 + Psyr_4865 0.48 -0.5
5,774,252 + Psyr_4865 0.48 +0.2
5,774,253 - Psyr_4865 0.49 +0.5
5,774,253 - Psyr_4865 0.49 -1.0
5,774,314 + Psyr_4865 0.54 -1.8
5,774,430 + Psyr_4865 0.65 -1.5
5,774,430 + Psyr_4865 0.65 -0.0
5,774,430 + Psyr_4865 0.65 +0.8
5,774,430 + Psyr_4865 0.65 -1.7
5,774,430 + Psyr_4865 0.65 -3.2
5,774,430 + Psyr_4865 0.65 -0.4
5,774,430 + Psyr_4865 0.65 +0.2
5,774,430 + Psyr_4865 0.65 -3.5
5,774,430 + Psyr_4865 0.65 +0.3
5,774,430 + Psyr_4865 0.65 -4.0
5,774,430 + Psyr_4865 0.65 -2.3
5,774,430 + Psyr_4865 0.65 +1.5
5,774,430 + Psyr_4865 0.65 +2.8
5,774,431 - Psyr_4865 0.65 -0.5
5,774,431 - Psyr_4865 0.65 -4.2
5,774,431 - Psyr_4865 0.65 -3.3
5,774,431 - Psyr_4865 0.65 +1.1
5,774,431 - Psyr_4865 0.65 -0.0
5,774,431 - Psyr_4865 0.65 +1.7
5,774,431 - Psyr_4865 0.65 -3.0
5,774,431 - Psyr_4865 0.65 -2.0
5,774,431 - Psyr_4865 0.65 -1.5
5,774,431 - Psyr_4865 0.65 +0.2
5,774,431 - Psyr_4865 0.65 -0.7
5,774,432 + Psyr_4865 0.65 +0.9
5,774,432 + Psyr_4865 0.65 +0.9
5,774,433 - Psyr_4865 0.65 -1.2
5,774,433 - Psyr_4865 0.65 -2.6
5,774,444 + Psyr_4865 0.66 -0.0
5,774,444 + Psyr_4865 0.66 -2.6
5,774,444 + Psyr_4865 0.66 +1.8
5,774,444 + Psyr_4865 0.66 -1.5
5,774,445 - Psyr_4865 0.66 -0.1
5,774,445 - Psyr_4865 0.66 -4.1
5,774,445 - Psyr_4865 0.66 -0.8
5,774,452 - Psyr_4865 0.67 -1.4
5,774,594 + Psyr_4865 0.80 +1.4
5,774,654 + Psyr_4865 0.85 +0.8
5,774,655 - Psyr_4865 0.85 -2.4
5,774,711 + +0.2
5,774,712 - -3.9
5,774,712 - -1.3
5,774,712 - -0.7
5,774,712 - +0.0
5,774,724 + +0.7
5,774,724 + -2.0
5,774,724 + -2.5
5,774,725 - -2.0
5,774,725 - -2.5
5,774,725 - +1.3
5,774,725 - +1.3
5,774,726 + -2.1
5,774,726 + -1.4
5,774,726 + -1.4
5,774,726 + -0.5
5,774,726 + +1.0
5,774,726 + +0.2
5,774,726 + +0.9
5,774,726 + +0.6
5,774,726 + +0.8
5,774,727 - +2.2
5,774,727 - -1.5
5,774,727 - -0.7
5,774,821 + -1.5
5,774,821 + +1.5
5,774,821 + +0.9
5,774,821 + -2.8
5,774,821 + -0.7
5,774,821 + -0.4
5,774,822 - -0.7
5,774,822 - +0.5
5,774,832 + +1.4
5,774,832 + +0.3
5,774,832 + +1.6
5,774,833 - -1.2
5,774,833 - +0.5
5,774,838 + +0.7
5,775,146 - Psyr_4866 0.14 -2.3
5,775,259 + Psyr_4866 0.22 +2.2
5,775,259 + Psyr_4866 0.22 -1.5
5,775,259 + Psyr_4866 0.22 +0.6
5,775,260 - Psyr_4866 0.22 +0.5
5,775,260 - Psyr_4866 0.22 +1.1
5,775,358 + Psyr_4866 0.29 -1.5
5,775,359 - Psyr_4866 0.29 -0.2
5,775,359 - Psyr_4866 0.29 +0.8
5,775,359 - Psyr_4866 0.29 +0.7
5,775,359 - Psyr_4866 0.29 -0.2
5,775,359 - Psyr_4866 0.29 -2.0
5,775,362 + Psyr_4866 0.29 -1.0
5,775,362 + Psyr_4866 0.29 +0.5
5,775,362 + Psyr_4866 0.29 +0.0
5,775,438 + Psyr_4866 0.35 -0.7
5,775,439 - Psyr_4866 0.35 -0.8
5,775,439 - Psyr_4866 0.35 -2.8
5,775,443 - Psyr_4866 0.35 +1.6
5,775,443 - Psyr_4866 0.35 -0.4
5,775,493 + Psyr_4866 0.39 +0.0
5,775,494 - Psyr_4866 0.39 +0.6
5,775,494 - Psyr_4866 0.39 -1.2
5,775,521 + Psyr_4866 0.41 +0.3
5,775,602 - Psyr_4866 0.47 -1.4
5,775,763 + Psyr_4866 0.59 +1.4
5,775,764 - Psyr_4866 0.59 +0.6
5,775,820 + Psyr_4866 0.63 +1.7
5,775,820 + Psyr_4866 0.63 +2.3
5,775,820 + Psyr_4866 0.63 -0.2
5,775,820 + Psyr_4866 0.63 -1.2
5,775,820 + Psyr_4866 0.63 +4.1
5,775,820 + Psyr_4866 0.63 -1.2
5,775,820 + Psyr_4866 0.63 +1.1
5,775,820 + Psyr_4866 0.63 -1.7
5,775,820 + Psyr_4866 0.63 +1.5
5,775,820 + Psyr_4866 0.63 +0.7
5,775,820 + Psyr_4866 0.63 +2.3
5,775,820 + Psyr_4866 0.63 -0.1
5,775,821 - Psyr_4866 0.63 +1.3
5,775,821 - Psyr_4866 0.63 +0.3
5,775,821 - Psyr_4866 0.63 +0.2
5,775,821 - Psyr_4866 0.63 +1.4
5,775,821 - Psyr_4866 0.63 -1.8
5,775,821 - Psyr_4866 0.63 -0.7
5,775,821 - Psyr_4866 0.63 -2.3
5,775,821 - Psyr_4866 0.63 +0.2
5,775,821 - Psyr_4866 0.63 -1.3
5,775,821 - Psyr_4866 0.63 +0.8
5,775,821 - Psyr_4866 0.63 -0.4
5,775,821 - Psyr_4866 0.63 +1.7
5,776,069 + Psyr_4866 0.81 -2.8
5,776,069 + Psyr_4866 0.81 -0.1
5,776,069 + Psyr_4866 0.81 -2.9
5,776,069 + Psyr_4866 0.81 -2.0
5,776,069 + Psyr_4866 0.81 +1.0
5,776,069 + Psyr_4866 0.81 -1.9
5,776,069 + Psyr_4866 0.81 +2.7
5,776,070 - Psyr_4866 0.81 +1.3
5,776,070 - Psyr_4866 0.81 +0.7
5,776,070 - Psyr_4866 0.81 +1.8
5,776,070 - Psyr_4866 0.81 -1.0
5,776,070 - Psyr_4866 0.81 -0.3
5,776,072 + Psyr_4866 0.81 +1.4
5,776,073 - Psyr_4866 0.81 +0.3
5,776,195 + +1.1
5,776,195 + -0.5
5,776,195 + -3.5
5,776,249 + +0.9
5,776,674 + Psyr_4867 0.21 +1.0
5,776,674 + Psyr_4867 0.21 -2.4
5,776,674 + Psyr_4867 0.21 +0.1
5,776,930 + Psyr_4867 0.39 -0.3
5,776,930 + Psyr_4867 0.39 +1.6
5,776,930 + Psyr_4867 0.39 -1.4
5,777,153 - Psyr_4867 0.56 +1.7
5,777,187 + Psyr_4867 0.58 +0.0
5,777,187 + Psyr_4867 0.58 -1.7
5,777,188 - Psyr_4867 0.58 -0.4
5,777,188 - Psyr_4867 0.58 -1.2
5,777,188 - Psyr_4867 0.58 -0.1
5,777,322 + Psyr_4867 0.68 +0.9
5,777,323 - Psyr_4867 0.68 +1.1

Or see this region's nucleotide sequence