Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4762 and Psyr_4763 are separated by 184 nucleotides Psyr_4763 and Psyr_4764 are separated by 85 nucleotides Psyr_4764 and Psyr_4765 are separated by 489 nucleotides
Psyr_4762: Psyr_4762 - conserved hypothetical protein, at 5,637,020 to 5,637,886
_4762
Psyr_4763: Psyr_4763 - Peptidase C56, PfpI, at 5,638,071 to 5,638,610
_4763
Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892
_4764
Psyr_4765: Psyr_4765 - TraX, at 5,640,382 to 5,641,128
_4765
Position (kb) 5638
5639
5640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.786 kb on + strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.787 kb on - strand, within Psyr_4762 at 5637.872 kb on + strand at 5637.872 kb on + strand at 5637.873 kb on - strand at 5637.887 kb on - strand at 5637.895 kb on - strand at 5637.958 kb on + strand at 5637.958 kb on + strand at 5638.042 kb on + strand at 5638.043 kb on - strand at 5638.049 kb on - strand at 5638.076 kb on + strand at 5638.076 kb on + strand at 5638.076 kb on + strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.077 kb on - strand at 5638.099 kb on + strand at 5638.099 kb on + strand at 5638.287 kb on + strand, within Psyr_4763 at 5638.315 kb on + strand, within Psyr_4763 at 5638.315 kb on + strand, within Psyr_4763 at 5638.316 kb on - strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.339 kb on + strand, within Psyr_4763 at 5638.340 kb on - strand, within Psyr_4763 at 5638.340 kb on - strand, within Psyr_4763 at 5638.441 kb on + strand, within Psyr_4763 at 5638.442 kb on - strand, within Psyr_4763 at 5638.442 kb on - strand, within Psyr_4763 at 5638.448 kb on + strand, within Psyr_4763 at 5638.449 kb on - strand, within Psyr_4763 at 5638.449 kb on - strand, within Psyr_4763 at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.625 kb on + strand at 5638.626 kb on - strand at 5638.665 kb on - strand at 5638.665 kb on - strand at 5638.666 kb on + strand at 5638.666 kb on + strand at 5638.666 kb on + strand at 5638.667 kb on - strand at 5638.765 kb on + strand at 5638.765 kb on + strand at 5638.766 kb on - strand at 5638.784 kb on + strand at 5638.785 kb on - strand at 5638.785 kb on - strand at 5639.003 kb on - strand, within Psyr_4764 at 5639.014 kb on + strand, within Psyr_4764 at 5639.014 kb on + strand, within Psyr_4764 at 5639.015 kb on - strand, within Psyr_4764 at 5639.311 kb on + strand, within Psyr_4764 at 5639.312 kb on - strand, within Psyr_4764 at 5639.312 kb on - strand, within Psyr_4764 at 5639.348 kb on - strand, within Psyr_4764 at 5639.348 kb on - strand, within Psyr_4764 at 5639.377 kb on + strand, within Psyr_4764 at 5639.378 kb on - strand, within Psyr_4764 at 5639.378 kb on - strand, within Psyr_4764 at 5639.378 kb on - strand, within Psyr_4764 at 5639.378 kb on - strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.851 kb on + strand at 5639.852 kb on - strand at 5639.945 kb on - strand at 5639.945 kb on - strand at 5639.950 kb on + strand at 5639.950 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.276 kb on + strand at 5640.276 kb on + strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.281 kb on - strand at 5640.281 kb on - strand at 5640.705 kb on - strand, within Psyr_4765
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 5,637,786 + Psyr_4762 0.88 -2.1 5,637,786 + Psyr_4762 0.88 -0.5 5,637,786 + Psyr_4762 0.88 -2.1 5,637,786 + Psyr_4762 0.88 +2.3 5,637,786 + Psyr_4762 0.88 +1.8 5,637,786 + Psyr_4762 0.88 +2.5 5,637,786 + Psyr_4762 0.88 -3.0 5,637,786 + Psyr_4762 0.88 -2.9 5,637,786 + Psyr_4762 0.88 -0.8 5,637,786 + Psyr_4762 0.88 -0.6 5,637,786 + Psyr_4762 0.88 +0.9 5,637,786 + Psyr_4762 0.88 -2.1 5,637,786 + Psyr_4762 0.88 +0.3 5,637,786 + Psyr_4762 0.88 -0.8 5,637,786 + Psyr_4762 0.88 +1.9 5,637,786 + Psyr_4762 0.88 +0.6 5,637,786 + Psyr_4762 0.88 -2.6 5,637,786 + Psyr_4762 0.88 +0.6 5,637,786 + Psyr_4762 0.88 +2.2 5,637,786 + Psyr_4762 0.88 +2.7 5,637,786 + Psyr_4762 0.88 -0.0 5,637,786 + Psyr_4762 0.88 -0.7 5,637,786 + Psyr_4762 0.88 -0.9 5,637,786 + Psyr_4762 0.88 -1.9 5,637,786 + Psyr_4762 0.88 +1.1 5,637,786 + Psyr_4762 0.88 -1.2 5,637,786 + Psyr_4762 0.88 +1.4 5,637,786 + Psyr_4762 0.88 +0.5 5,637,786 + Psyr_4762 0.88 -0.5 5,637,786 + Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 +1.5 5,637,787 - Psyr_4762 0.88 -3.1 5,637,787 - Psyr_4762 0.88 -2.4 5,637,787 - Psyr_4762 0.88 -0.1 5,637,787 - Psyr_4762 0.88 +1.4 5,637,787 - Psyr_4762 0.88 -1.1 5,637,787 - Psyr_4762 0.88 -2.2 5,637,787 - Psyr_4762 0.88 -2.5 5,637,787 - Psyr_4762 0.88 -1.4 5,637,787 - Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 -0.3 5,637,787 - Psyr_4762 0.88 -3.4 5,637,787 - Psyr_4762 0.88 +0.7 5,637,787 - Psyr_4762 0.88 +2.9 5,637,787 - Psyr_4762 0.88 +0.5 5,637,787 - Psyr_4762 0.88 +0.5 5,637,872 + -3.4 5,637,872 + +0.0 5,637,873 - +0.0 5,637,887 - +3.2 5,637,895 - -1.4 5,637,958 + +0.6 5,637,958 + -0.4 5,638,042 + -2.0 5,638,043 - +0.3 5,638,049 - -1.7 5,638,076 + +2.0 5,638,076 + -1.6 5,638,076 + -0.9 5,638,077 - +2.0 5,638,077 - +0.7 5,638,077 - -3.1 5,638,077 - +0.0 5,638,077 - +1.8 5,638,099 + +0.7 5,638,099 + +1.0 5,638,287 + Psyr_4763 0.40 +1.4 5,638,315 + Psyr_4763 0.45 +0.9 5,638,315 + Psyr_4763 0.45 +0.6 5,638,316 - Psyr_4763 0.45 +0.0 5,638,339 + Psyr_4763 0.50 +0.8 5,638,339 + Psyr_4763 0.50 -0.8 5,638,339 + Psyr_4763 0.50 -2.5 5,638,339 + Psyr_4763 0.50 -0.6 5,638,340 - Psyr_4763 0.50 -3.5 5,638,340 - Psyr_4763 0.50 -2.3 5,638,441 + Psyr_4763 0.69 -2.2 5,638,442 - Psyr_4763 0.69 +1.8 5,638,442 - Psyr_4763 0.69 -2.5 5,638,448 + Psyr_4763 0.70 +0.8 5,638,449 - Psyr_4763 0.70 +0.3 5,638,449 - Psyr_4763 0.70 +1.2 5,638,625 + -2.6 5,638,625 + +0.6 5,638,625 + +0.6 5,638,625 + +0.6 5,638,626 - -0.9 5,638,665 - -3.3 5,638,665 - +0.7 5,638,666 + +0.3 5,638,666 + +1.8 5,638,666 + +0.9 5,638,667 - +0.4 5,638,765 + -0.7 5,638,765 + -2.4 5,638,766 - +1.3 5,638,784 + -2.6 5,638,785 - -0.1 5,638,785 - -0.1 5,639,003 - Psyr_4764 0.26 +1.8 5,639,014 + Psyr_4764 0.27 -2.0 5,639,014 + Psyr_4764 0.27 -2.0 5,639,015 - Psyr_4764 0.27 -1.7 5,639,311 + Psyr_4764 0.51 +0.4 5,639,312 - Psyr_4764 0.51 +1.7 5,639,312 - Psyr_4764 0.51 -0.0 5,639,348 - Psyr_4764 0.54 +0.7 5,639,348 - Psyr_4764 0.54 +0.0 5,639,377 + Psyr_4764 0.57 +0.5 5,639,378 - Psyr_4764 0.57 -2.8 5,639,378 - Psyr_4764 0.57 -2.3 5,639,378 - Psyr_4764 0.57 -0.1 5,639,378 - Psyr_4764 0.57 -0.2 5,639,383 + Psyr_4764 0.57 -2.1 5,639,383 + Psyr_4764 0.57 -0.2 5,639,383 + Psyr_4764 0.57 -1.2 5,639,383 + Psyr_4764 0.57 -1.0 5,639,383 + Psyr_4764 0.57 +0.3 5,639,383 + Psyr_4764 0.57 -0.8 5,639,383 + Psyr_4764 0.57 +1.5 5,639,383 + Psyr_4764 0.57 -0.3 5,639,383 + Psyr_4764 0.57 -1.6 5,639,383 + Psyr_4764 0.57 +1.8 5,639,383 + Psyr_4764 0.57 -3.1 5,639,383 + Psyr_4764 0.57 -0.4 5,639,383 + Psyr_4764 0.57 -1.1 5,639,383 + Psyr_4764 0.57 -2.8 5,639,383 + Psyr_4764 0.57 -1.9 5,639,384 - Psyr_4764 0.57 +0.8 5,639,384 - Psyr_4764 0.57 +0.0 5,639,384 - Psyr_4764 0.57 +0.3 5,639,384 - Psyr_4764 0.57 -0.1 5,639,384 - Psyr_4764 0.57 -3.3 5,639,384 - Psyr_4764 0.57 +2.0 5,639,384 - Psyr_4764 0.57 -0.4 5,639,384 - Psyr_4764 0.57 -1.4 5,639,384 - Psyr_4764 0.57 +0.5 5,639,384 - +0.6 5,639,384 - Psyr_4764 0.57 -1.7 5,639,384 - Psyr_4764 0.57 -3.4 5,639,384 - Psyr_4764 0.57 -2.1 5,639,384 - Psyr_4764 0.57 +0.4 5,639,384 - Psyr_4764 0.57 +0.9 5,639,384 - Psyr_4764 0.57 +0.1 5,639,384 - Psyr_4764 0.57 -2.2 5,639,384 - Psyr_4764 0.57 -2.3 5,639,384 - Psyr_4764 0.57 +0.5 5,639,851 + -2.4 5,639,852 - -0.6 5,639,945 - +0.1 5,639,945 - +0.4 5,639,950 + -1.9 5,639,950 + +0.3 5,640,231 + -2.9 5,640,231 + -3.1 5,640,231 + -3.2 5,640,276 + -0.1 5,640,276 + +0.8 5,640,277 - +1.7 5,640,277 - -1.7 5,640,277 - +0.3 5,640,277 - -1.2 5,640,280 + +0.5 5,640,280 + -0.4 5,640,280 + +1.4 5,640,281 - +0.6 5,640,281 - -1.6 5,640,705 - Psyr_4765 0.43 +0.5
Or see this region's nucleotide sequence