Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4698

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
5,566,323	-		Psyr_4697	0.70	-3.1
5,566,390	-		Psyr_4697	0.77	-3.0
5,566,464	+		Psyr_4697	0.85	+0.0
5,566,465	-		Psyr_4697	0.85	+0.7
5,566,465	-		Psyr_4697	0.85	+1.8
5,566,465	-		Psyr_4697	0.85	+1.9
5,566,774	+				-2.9
5,566,783	-				-0.4
5,566,786	+				+0.6
5,566,786	+				+1.2
5,566,786	+				-0.9
5,566,787	-				-2.4
5,566,787	-				+0.7
5,566,787	-				+2.4
5,566,787	-				+2.0
5,566,787	-				-0.6
5,566,787	-				-0.3
5,566,833	+				-1.7
5,566,834	-				-1.6
5,566,838	-				+0.0
5,566,838	-				+1.5
5,566,976	+				+0.6
5,567,049	+				+1.7
5,567,049	+				-2.7
5,567,049	+				-1.6
5,567,049	+				-2.6
5,567,049	+				+0.2
5,567,050	-				-2.3
5,567,050	-				-3.6
5,567,050	-				-0.0
5,567,050	-				-2.0
5,567,050	-				+0.3
5,567,050	-				-0.5
5,567,051	+				+1.3
5,567,051	+				+2.6
5,567,051	+				+2.0
5,567,052	-				-1.2
5,567,052	-				-0.7
5,567,076	-				-0.0
5,567,109	+				-0.6
5,567,110	-				-1.2
5,567,110	-				-0.3
5,567,110	-				-2.2
5,567,128	-				-2.2
5,567,130	+				-2.9
5,567,131	-				+0.3
5,567,131	-				-3.3
5,567,171	+				+1.8
5,567,171	+				+2.6
5,567,172	-				+0.1
5,567,192	+				-0.1
5,567,192	+				+1.1
5,567,192	+				-1.4
5,567,192	+				-0.4
5,567,192	+				-0.6
5,567,192	+				+0.5
5,567,192	+				-0.2
5,567,192	+				+1.4
5,567,192	+				-1.0
5,567,192	+				-0.4
5,567,192	+				+1.6
5,567,192	+				-2.1
5,567,192	+				+1.5
5,567,193	-				+1.6
5,567,193	-				-2.5
5,567,193	-				+1.0
5,567,193	-				+0.8
5,567,193	-				+1.0
5,567,193	-				-1.6
5,567,193	-				+1.8
5,567,193	-				+1.6
5,567,193	-				-1.7
5,567,193	-				-3.3
5,567,219	+				+0.6
5,567,219	+				+2.7
5,567,219	+				+0.3
5,567,219	+				+1.2
5,567,220	-				+2.6
5,567,411	+		Psyr_4698	0.30	+0.4
5,567,411	+		Psyr_4698	0.30	+1.5
5,567,411	+		Psyr_4698	0.30	-0.8
5,567,411	+		Psyr_4698	0.30	+1.8
5,567,411	+		Psyr_4698	0.30	-0.9
5,567,411	+		Psyr_4698	0.30	-2.1
5,567,411	+		Psyr_4698	0.30	-1.3
5,567,411	+		Psyr_4698	0.30	+2.8
5,567,411	+		Psyr_4698	0.30	+0.2
5,567,411	+		Psyr_4698	0.30	-0.7
5,567,412	-		Psyr_4698	0.30	-2.5
5,567,412	-		Psyr_4698	0.30	+1.7
5,567,412	-		Psyr_4698	0.30	-0.1
5,567,412	-		Psyr_4698	0.30	-3.3
5,567,412	-		Psyr_4698	0.30	+0.3
5,567,412	-		Psyr_4698	0.30	-0.1
5,567,412	-		Psyr_4698	0.30	+0.9
5,567,412	-		Psyr_4698	0.30	-0.0
5,567,412	-		Psyr_4698	0.30	-0.3
5,567,412	-		Psyr_4698	0.30	-1.9
5,567,462	+		Psyr_4698	0.36	-1.2
5,567,462	+		Psyr_4698	0.36	-3.4
5,567,462	+		Psyr_4698	0.36	+0.9
5,567,462	+		Psyr_4698	0.36	-2.2
5,567,462	+		Psyr_4698	0.36	+0.4
5,567,462	+		Psyr_4698	0.36	-0.7
5,567,462	+		Psyr_4698	0.36	+1.8
5,567,462	+		Psyr_4698	0.36	+0.3
5,567,462	+		Psyr_4698	0.36	-1.4
5,567,462	+		Psyr_4698	0.36	+1.0
5,567,462	+		Psyr_4698	0.36	-1.8
5,567,462	+		Psyr_4698	0.36	-2.4
5,567,463	-		Psyr_4698	0.36	-2.1
5,567,463	-		Psyr_4698	0.36	-3.3
5,567,463	-		Psyr_4698	0.36	+0.4
5,567,463	-		Psyr_4698	0.36	-1.2
5,567,463	-		Psyr_4698	0.36	+0.6
5,567,463	-		Psyr_4698	0.36	-1.4
5,567,463	-		Psyr_4698	0.36	-1.0
5,567,503	-		Psyr_4698	0.40	-0.0
5,567,503	-		Psyr_4698	0.40	+0.6
5,567,633	+		Psyr_4698	0.55	-0.3
5,567,882	+		Psyr_4698	0.83	-0.0
5,567,882	+		Psyr_4698	0.83	-1.9
5,567,882	+		Psyr_4698	0.83	-1.9
5,567,882	+		Psyr_4698	0.83	+0.4
5,567,882	+		Psyr_4698	0.83	+0.7
5,567,882	+		Psyr_4698	0.83	-3.5
5,567,882	+		Psyr_4698	0.83	+1.9
5,567,883	-		Psyr_4698	0.83	-1.0
5,567,883	-		Psyr_4698	0.83	-0.2
5,567,924	+		Psyr_4698	0.88	-1.2
5,567,925	-		Psyr_4698	0.88	+0.6
5,567,925	-		Psyr_4698	0.88	-1.6
5,567,925	-		Psyr_4698	0.88	-2.6
5,567,990	+				-0.4
5,567,990	+				-3.0
5,567,990	+				+0.1
5,567,990	+				+2.6
5,567,990	+				-3.6
5,567,990	+				-3.7
5,567,990	+				-3.1
5,567,990	+				-2.7
5,567,990	+				-0.9
5,567,991	-				-0.7
5,567,991	-				+1.3
5,567,991	-				-1.7
5,567,991	-				+0.7
5,568,049	-				+0.4
5,568,117	+				-1.1
5,568,117	+				+0.6
5,568,118	-				+0.5
5,568,195	+				-0.7
5,568,196	-				-0.2
5,568,196	-				-3.1
5,568,196	-				-1.6
5,568,196	-				-2.7
5,568,231	-				-2.0
5,568,376	+		Psyr_4699	0.27	-0.7
5,568,376	+		Psyr_4699	0.27	+0.0
5,568,376	+		Psyr_4699	0.27	-2.5
5,568,376	+		Psyr_4699	0.27	+1.4
5,568,376	+		Psyr_4699	0.27	-1.9
5,568,377	-		Psyr_4699	0.27	+0.7
5,568,377	-		Psyr_4699	0.27	+1.6
5,568,377	-		Psyr_4699	0.27	-0.5
5,568,377	-		Psyr_4699	0.27	-2.1
5,568,377	-		Psyr_4699	0.27	+2.4
5,568,755	-				+0.8
5,568,801	-				-0.4
5,568,801	-				-3.8
5,568,819	+				-0.0
5,568,819	+				-0.5
5,568,820	-				-0.0
5,568,825	+				+0.2
5,568,826	-				-1.0
5,568,827	+				-1.9
5,568,827	+				-1.4
5,568,827	+				-0.4
5,568,827	+				-1.3
5,568,827	+				+0.3
5,568,827	+				+1.2
5,568,827	+				+1.5
5,568,827	+				+1.5
5,568,827	+				+1.7
5,568,827	+				+0.1
5,568,827	+				-2.5
5,568,827	+				-2.2
5,568,827	+				+0.8
5,568,827	+				-1.6
5,568,828	-				-2.1
5,568,828	-				+2.1
5,568,828	-				+0.7
5,568,828	-				+1.6
5,568,828	-				+1.2
5,568,867	+				+1.3
5,568,884	+				+0.9
5,568,922	+				-1.7
5,568,964	+				+0.6
5,568,964	+				-1.6
5,568,964	+				+0.1
5,568,999	+				-2.2
5,568,999	+				+1.2
5,568,999	+				+1.1
5,568,999	+				+3.0
5,568,999	+				+0.3
5,568,999	+				-1.7
5,568,999	+				-0.0
5,568,999	+				-1.7
5,568,999	+				-0.7
5,568,999	+				-0.3
5,569,000	-				+1.9
5,569,000	-				-0.3
5,569,000	-				+1.2
5,569,000	-				-3.2
5,569,000	-				-4.1
5,569,000	-				-1.6
5,569,000	-				-0.0
5,569,000	-				+1.6
5,569,000	-				-1.2
5,569,000	-				-0.0
5,569,000	-				+0.3
5,569,000	-				+1.7
5,569,019	+				-2.2
5,569,019	+				-1.2
5,569,019	+				-0.5
5,569,019	+				-0.1
5,569,019	+				+3.5
5,569,020	-				+0.8
5,569,020	-				+1.2