Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4126

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
4,913,972	+		Psyr_4124	0.64	-1.3
4,913,998	+		Psyr_4124	0.68	+0.5
4,914,062	+		Psyr_4124	0.78	+0.3
4,914,063	-		Psyr_4124	0.78	-1.6
4,914,092	+		Psyr_4124	0.83	+2.9
4,914,140	-				-1.1
4,914,173	+				-2.6
4,914,177	+				+0.2
4,914,177	+				+0.3
4,914,177	+				+0.1
4,914,177	+				+1.2
4,914,178	-				+1.1
4,914,178	-				-0.8
4,914,178	-				-3.1
4,914,178	-				-0.0
4,914,178	-				+0.3
4,914,239	-				+1.1
4,914,261	+				+0.5
4,914,261	+				+0.8
4,914,262	-				-0.1
4,914,270	+				+0.1
4,914,270	+				+0.2
4,914,271	-				-0.6
4,914,271	-				-2.2
4,914,283	+				+0.5
4,914,283	+				+0.3
4,914,283	+				+3.3
4,914,283	+				+0.4
4,914,283	+				+1.6
4,914,283	+				+2.9
4,914,284	-				-0.5
4,914,284	-				+0.8
4,914,284	-				-1.6
4,914,284	-				+0.1
4,914,284	-				-2.7
4,914,284	-				+0.7
4,914,284	-				-0.1
4,914,309	+				+0.9
4,914,310	-				+1.1
4,914,310	-				+1.7
4,914,326	+				-0.3
4,914,326	+				+0.1
4,914,327	-				-3.9
4,914,327	-				+0.2
4,914,356	+				+0.9
4,914,356	+				+1.3
4,914,356	+				+0.6
4,914,356	+				+1.7
4,914,356	+				-2.7
4,914,356	+				+1.2
4,914,357	-				+0.4
4,914,503	+		Psyr_4125	0.37	-1.5
4,914,503	+		Psyr_4125	0.37	+0.5
4,914,503	+		Psyr_4125	0.37	-1.5
4,914,503	+		Psyr_4125	0.37	-0.4
4,914,781	+				-3.7
4,914,781	+				-1.6
4,914,781	+				+1.2
4,914,781	+				-3.3
4,914,781	+				+1.2
4,914,781	+				-1.7
4,914,781	+				+2.4
4,914,782	-				-2.6
4,914,782	-				+1.2
4,914,782	-				-1.5
4,914,782	-				-1.8
4,914,989	+				-0.5
4,914,990	-				-0.6
4,915,031	+				-1.2
4,915,031	+				-3.5
4,915,032	-				+3.0
4,915,082	+		Psyr_4126	0.10	+1.2
4,915,082	+		Psyr_4126	0.10	-3.4
4,915,082	+		Psyr_4126	0.10	-0.9
4,915,082	+		Psyr_4126	0.10	-2.1
4,915,083	-		Psyr_4126	0.11	-2.2
4,915,295	+		Psyr_4126	0.22	-2.5
4,915,295	+		Psyr_4126	0.22	-0.5
4,915,296	-		Psyr_4126	0.22	-1.9
4,915,296	-		Psyr_4126	0.22	-1.1
4,915,296	-		Psyr_4126	0.22	+0.5
4,915,296	-		Psyr_4126	0.22	-0.1
4,915,296	-		Psyr_4126	0.22	-2.2
4,915,562	+		Psyr_4126	0.36	-4.2
4,915,700	+		Psyr_4126	0.43	-2.4
4,915,700	+		Psyr_4126	0.43	-2.1
4,915,700	+		Psyr_4126	0.43	-3.2
4,915,700	+		Psyr_4126	0.43	+1.3
4,915,700	+		Psyr_4126	0.43	-0.8
4,915,700	+		Psyr_4126	0.43	-0.7
4,915,701	-		Psyr_4126	0.43	+1.5
4,915,701	-		Psyr_4126	0.43	-3.4
4,915,701	-		Psyr_4126	0.43	-2.6
4,915,701	-		Psyr_4126	0.43	+0.6
4,915,701	-		Psyr_4126	0.43	+0.0
4,915,701	-		Psyr_4126	0.43	-3.9
4,915,701	-		Psyr_4126	0.43	-1.8
4,915,701	-		Psyr_4126	0.43	+2.4
4,915,701	-				+0.5
4,915,701	-		Psyr_4126	0.43	-3.4
4,915,701	-		Psyr_4126	0.43	-1.3
4,915,701	-		Psyr_4126	0.43	-1.2
4,915,701	-		Psyr_4126	0.43	+0.9
4,915,724	+		Psyr_4126	0.44	-1.4
4,915,725	-		Psyr_4126	0.44	-2.2
4,916,033	+		Psyr_4126	0.61	-2.1
4,916,033	+		Psyr_4126	0.61	-3.1
4,916,033	+		Psyr_4126	0.61	-3.0
4,916,034	-		Psyr_4126	0.61	-3.1
4,916,060	+		Psyr_4126	0.62	-0.4
4,916,061	-		Psyr_4126	0.62	-0.9
4,916,061	-		Psyr_4126	0.62	-1.8
4,916,061	-		Psyr_4126	0.62	-1.8
4,916,120	+		Psyr_4126	0.65	-0.7
4,916,121	-		Psyr_4126	0.65	-1.8
4,916,149	+		Psyr_4126	0.67	-2.6
4,916,149	+		Psyr_4126	0.67	+0.9
4,916,149	+		Psyr_4126	0.67	-0.5
4,916,149	+		Psyr_4126	0.67	-1.9
4,916,149	+		Psyr_4126	0.67	-0.8
4,916,149	+		Psyr_4126	0.67	-2.6
4,916,149	+		Psyr_4126	0.67	-0.1
4,916,150	-		Psyr_4126	0.67	-1.9
4,916,150	-		Psyr_4126	0.67	-0.6
4,916,150	-		Psyr_4126	0.67	-3.8
4,916,232	-		Psyr_4126	0.71	-3.5
4,916,232	-		Psyr_4126	0.71	+0.5
4,916,332	-		Psyr_4126	0.76	-3.1
4,916,333	+		Psyr_4126	0.76	-0.8
4,916,333	+		Psyr_4126	0.76	-0.5
4,916,333	+		Psyr_4126	0.76	-2.6
4,916,333	+		Psyr_4126	0.76	+1.5
4,916,333	+		Psyr_4126	0.76	+0.8
4,916,333	+		Psyr_4126	0.76	+3.3
4,916,333	+		Psyr_4126	0.76	+0.3
4,916,333	+		Psyr_4126	0.76	+1.7
4,916,333	+		Psyr_4126	0.76	-3.4
4,916,333	+		Psyr_4126	0.76	-2.2
4,916,333	+		Psyr_4126	0.76	+1.2
4,916,333	+		Psyr_4126	0.76	-0.2
4,916,333	+		Psyr_4126	0.76	-1.1
4,916,333	+		Psyr_4126	0.76	-2.7
4,916,333	+		Psyr_4126	0.76	+0.7
4,916,334	-		Psyr_4126	0.76	-2.6
4,916,334	-		Psyr_4126	0.76	-1.1
4,916,334	-		Psyr_4126	0.76	-3.6
4,916,334	-		Psyr_4126	0.76	-0.8
4,916,334	-		Psyr_4126	0.76	-0.6
4,916,334	-		Psyr_4126	0.76	-2.9
4,916,334	-		Psyr_4126	0.76	+0.1
4,916,334	-		Psyr_4126	0.76	-0.8
4,916,433	-		Psyr_4126	0.82	-0.7
4,916,490	-		Psyr_4126	0.85	-2.7
4,916,490	-		Psyr_4126	0.85	-1.1
4,916,495	+		Psyr_4126	0.85	-0.8
4,916,627	+				-2.4
4,916,627	+				+0.5
4,916,627	+				-2.6
4,916,627	+				-2.5
4,916,627	+				-2.9
4,916,628	-				-3.2
4,916,628	-				+0.5
4,916,738	+				-3.9
4,916,739	-				-1.1
4,916,802	+				+0.8
4,916,802	+				-1.1
4,916,802	+				-2.1
4,916,802	+				-3.3
4,916,802	+				-2.7
4,916,802	+				-2.1
4,916,803	-				+0.4
4,916,803	-				-1.9
4,916,803	-				-2.4
4,916,803	-				+0.9
4,916,830	+				-3.0
4,916,836	+				-2.2
4,916,836	+				-3.2
4,916,836	+				+1.1
4,916,924	+		Psyr_4127	0.26	+1.2
4,916,924	+		Psyr_4127	0.26	-0.1
4,916,925	-		Psyr_4127	0.26	+1.5
4,916,925	-		Psyr_4127	0.26	+1.9
4,916,926	+		Psyr_4127	0.27	-1.8
4,916,927	-				-0.5
4,916,988	-		Psyr_4127	0.45	-1.6
4,916,989	+		Psyr_4127	0.45	-0.9
4,916,990	-		Psyr_4127	0.45	-2.2
4,916,990	-		Psyr_4127	0.45	-2.2
4,917,041	+		Psyr_4127	0.60	-2.1
4,917,042	-		Psyr_4127	0.61	-2.9
4,917,204	+				-1.9
4,917,223	-				+0.7
4,917,223	-				-1.5
4,917,223	-				-0.6
4,917,223	-				+0.6
4,917,242	+				-1.9
4,917,242	+				-1.3
4,917,243	-				+1.4
4,917,243	-				-1.6
4,917,530	+		Psyr_4128	0.32	-1.6
4,917,531	-		Psyr_4128	0.32	-3.4
4,917,560	+		Psyr_4128	0.35	+0.1
4,917,560	+		Psyr_4128	0.35	-3.3
4,917,560	+		Psyr_4128	0.35	-2.5
4,917,560	+		Psyr_4128	0.35	+0.6
4,917,560	+		Psyr_4128	0.35	-3.0
4,917,560	+		Psyr_4128	0.35	-0.8
4,917,560	+		Psyr_4128	0.35	-3.1
4,917,560	+		Psyr_4128	0.35	+0.5
4,917,560	+		Psyr_4128	0.35	-1.8
4,917,560	+		Psyr_4128	0.35	-2.5
4,917,560	+		Psyr_4128	0.35	-1.0
4,917,560	+		Psyr_4128	0.35	+1.3
4,917,560	+		Psyr_4128	0.35	-2.3
4,917,560	+		Psyr_4128	0.35	-0.2
4,917,560	+		Psyr_4128	0.35	-1.3
4,917,561	-		Psyr_4128	0.36	+0.1
4,917,561	-		Psyr_4128	0.36	+0.7
4,917,561	-		Psyr_4128	0.36	-4.6
4,917,561	-		Psyr_4128	0.36	-1.8
4,917,566	+		Psyr_4128	0.36	-1.1
4,917,566	+		Psyr_4128	0.36	-0.5
4,917,567	-		Psyr_4128	0.36	+0.5
4,917,567	-		Psyr_4128	0.36	-1.5
4,917,567	-		Psyr_4128	0.36	-2.1
4,917,567	-		Psyr_4128	0.36	-2.5
4,917,567	-		Psyr_4128	0.36	+0.5
4,917,567	-		Psyr_4128	0.36	+2.0
4,917,567	-		Psyr_4128	0.36	-3.2
4,917,567	-		Psyr_4128	0.36	-2.1
4,917,711	-		Psyr_4128	0.52	-2.9