Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3719

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
4,407,353	-				-0.6
4,407,361	+				-1.3
4,407,362	-				-2.1
4,407,440	+				-3.3
4,407,441	-				-2.8
4,407,508	-				-3.7
4,407,508	-				+0.6
4,407,515	+				-0.5
4,407,516	-				-0.5
4,407,516	-				+0.3
4,407,517	+				-0.6
4,407,517	+				+1.7
4,407,517	+				-0.9
4,407,517	+				+1.0
4,407,518	-				-0.1
4,407,518	-				-1.3
4,407,518	-				-0.9
4,407,518	-				+2.0
4,407,535	+		Psyr_3718	0.14	+0.3
4,407,535	+		Psyr_3718	0.14	+1.1
4,407,535	+		Psyr_3718	0.14	+1.3
4,407,542	+		Psyr_3718	0.16	+1.2
4,407,543	-		Psyr_3718	0.16	-2.6
4,407,606	-		Psyr_3718	0.34	+3.2
4,407,672	+		Psyr_3718	0.52	+0.4
4,407,673	-		Psyr_3718	0.53	+1.5
4,407,707	+		Psyr_3718	0.62	+0.5
4,407,707	+		Psyr_3718	0.62	-1.7
4,407,707	+		Psyr_3718	0.62	-0.1
4,407,707	+		Psyr_3718	0.62	-1.5
4,407,708	-		Psyr_3718	0.62	-3.3
4,407,708	-		Psyr_3718	0.62	-1.3
4,407,708	-		Psyr_3718	0.62	+2.2
4,407,816	+				+0.8
4,407,816	+				-2.2
4,407,817	-				-3.0
4,407,817	-				+1.3
4,407,817	-				+2.8
4,407,822	+				+0.4
4,407,823	-				-0.8
4,407,831	+				+0.1
4,407,831	+				-4.0
4,407,832	-				+1.8
4,407,832	-				+0.9
4,407,856	+				-1.7
4,407,856	+				-1.8
4,407,856	+				-0.8
4,407,856	+				-2.0
4,407,856	+				+1.2
4,407,856	+				-1.4
4,407,856	+				-0.1
4,407,856	+				+1.5
4,407,856	+				+0.1
4,407,856	+				+1.6
4,407,856	+				-0.1
4,407,856	+				-2.6
4,407,857	-				-3.0
4,407,857	-				+0.5
4,407,857	-				+0.3
4,407,857	-				-0.1
4,407,857	-				+0.6
4,407,859	+				+1.1
4,407,859	+				-2.1
4,407,860	-				-3.8
4,407,860	-				+1.8
4,407,860	-				-2.4
4,407,871	-				-0.7
4,407,897	+				-0.1
4,407,944	-				+3.1
4,407,974	+				-1.7
4,407,974	+				+1.8
4,407,974	+				+0.2
4,407,974	+				+2.5
4,407,975	-				+0.9
4,408,079	+		Psyr_3719	0.35	-3.5
4,408,079	+		Psyr_3719	0.35	-1.7
4,408,080	-		Psyr_3719	0.35	-2.3
4,408,080	-		Psyr_3719	0.35	-2.2
4,408,089	-		Psyr_3719	0.38	+0.8
4,408,089	-		Psyr_3719	0.38	+0.9
4,408,097	+		Psyr_3719	0.40	-3.5
4,408,142	+		Psyr_3719	0.52	+1.6
4,408,143	-		Psyr_3719	0.53	+0.1
4,408,160	+		Psyr_3719	0.57	+1.4
4,408,187	-		Psyr_3719	0.65	-1.6
4,408,187	-		Psyr_3719	0.65	-0.2
4,408,187	-		Psyr_3719	0.65	+0.2
4,408,219	+		Psyr_3719	0.74	-2.8
4,408,219	+		Psyr_3719	0.74	-3.0
4,408,219	+		Psyr_3719	0.74	-0.1
4,408,219	+		Psyr_3719	0.74	-1.5
4,408,219	+		Psyr_3719	0.74	-2.2
4,408,219	+		Psyr_3719	0.74	-4.3
4,408,219	+		Psyr_3719	0.74	+0.1
4,408,219	+		Psyr_3719	0.74	-0.0
4,408,220	-		Psyr_3719	0.74	-2.3
4,408,220	-		Psyr_3719	0.74	+1.6
4,408,220	-		Psyr_3719	0.74	-0.6
4,408,220	-		Psyr_3719	0.74	-1.8
4,408,263	+		Psyr_3719	0.86	-1.1
4,408,263	+		Psyr_3719	0.86	-2.1
4,408,263	+		Psyr_3719	0.86	+3.3
4,408,263	+		Psyr_3719	0.86	-2.7
4,408,263	+		Psyr_3719	0.86	-1.5
4,408,263	+		Psyr_3719	0.86	+1.1
4,408,263	+		Psyr_3719	0.86	-2.9
4,408,264	-		Psyr_3719	0.86	+1.0
4,408,264	-		Psyr_3719	0.86	-1.3
4,408,264	-		Psyr_3719	0.86	+0.0
4,408,264	-		Psyr_3719	0.86	-1.2
4,408,264	-		Psyr_3719	0.86	+2.3
4,408,264	-		Psyr_3719	0.86	-2.6
4,408,264	-		Psyr_3719	0.86	-0.1
4,408,264	-		Psyr_3719	0.86	+2.2
4,408,264	-		Psyr_3719	0.86	+1.9
4,408,264	-		Psyr_3719	0.86	+1.8
4,408,268	-		Psyr_3719	0.87	-1.1
4,408,268	-		Psyr_3719	0.87	-0.1
4,408,311	+				+0.6
4,408,312	-				-1.4
4,408,330	-				-0.6
4,408,331	+				-2.6
4,408,331	+				+0.2
4,408,331	+				+1.6
4,408,331	+				-3.1
4,408,331	+				-1.5
4,408,331	+				-3.3
4,408,331	+				-1.1
4,408,331	+				-1.4
4,408,331	+				+1.0
4,408,331	+				-0.8
4,408,331	+				+0.2
4,408,331	+				+2.1
4,408,331	+				-1.3
4,408,331	+				+0.6
4,408,331	+				+1.2
4,408,331	+				-2.8
4,408,331	+				+1.1
4,408,332	-				+0.7
4,408,332	-				-0.8
4,408,332	-				-2.0
4,408,332	-				-1.7
4,408,332	-				+2.4
4,408,332	-				+2.8
4,408,332	-				-3.2
4,408,332	-				-0.3
4,408,332	-				-1.7
4,408,332	-				+0.6
4,408,332	-				-2.0
4,408,332	-				+1.0
4,408,332	-				-1.1
4,408,332	-				-0.6
4,408,332	-				+1.0
4,408,332	-				-3.0
4,408,332	-				+0.6
4,408,385	-				+1.4
4,408,385	-				+0.9
4,408,431	+				-0.4
4,408,431	+				+0.6
4,408,431	+				+0.6
4,408,432	-				+0.1
4,408,526	+				-1.3
4,408,526	+				-1.8
4,408,648	+				+1.9
4,408,648	+				+0.4
4,408,648	+				-2.5
4,408,648	+				-1.8
4,408,648	+				+1.5
4,408,649	-				-1.6
4,408,689	+				+0.9
4,408,727	+		Psyr_3720	0.15	-2.0
4,408,727	+		Psyr_3720	0.15	-1.0
4,408,728	-		Psyr_3720	0.15	-2.8
4,408,728	-		Psyr_3720	0.15	+0.5
4,408,728	-		Psyr_3720	0.15	+0.5
4,408,807	+		Psyr_3720	0.28	+1.7
4,408,808	-		Psyr_3720	0.28	-2.9
4,408,816	+		Psyr_3720	0.30	-2.3
4,408,816	+				+1.9
4,408,816	+		Psyr_3720	0.30	-1.5
4,408,817	-		Psyr_3720	0.30	-0.3
4,408,817	-		Psyr_3720	0.30	+0.4
4,408,846	+		Psyr_3720	0.35	+1.0
4,408,847	-		Psyr_3720	0.35	+1.3
4,408,865	+		Psyr_3720	0.38	+0.8
4,408,866	-		Psyr_3720	0.38	-3.8
4,408,874	+		Psyr_3720	0.39	-0.1
4,408,875	-		Psyr_3720	0.39	-1.5
4,408,875	-		Psyr_3720	0.39	-2.2
4,408,875	-		Psyr_3720	0.39	+1.4
4,408,875	-		Psyr_3720	0.39	+0.6
4,408,875	-		Psyr_3720	0.39	+1.1
4,408,880	+		Psyr_3720	0.40	+1.5
4,408,880	+		Psyr_3720	0.40	-0.6
4,408,880	+		Psyr_3720	0.40	-0.5
4,408,997	+		Psyr_3720	0.60	-0.1
4,408,997	+		Psyr_3720	0.60	-1.8
4,408,998	-		Psyr_3720	0.60	-2.8
4,409,076	-		Psyr_3720	0.73	+0.2
4,409,157	+		Psyr_3720	0.86	-2.5
4,409,157	+		Psyr_3720	0.86	+1.1
4,409,158	-		Psyr_3720	0.86	-2.3
4,409,158	-		Psyr_3720	0.86	+0.6
4,409,161	+		Psyr_3720	0.87	-0.4
4,409,162	-		Psyr_3720	0.87	-1.1
4,409,162	-		Psyr_3720	0.87	-2.4
4,409,162	-		Psyr_3720	0.87	+0.9
4,409,162	-		Psyr_3720	0.87	+2.0
4,409,162	-		Psyr_3720	0.87	+1.4
4,409,179	+		Psyr_3720	0.90	-0.6
4,409,180	-		Psyr_3720	0.90	+1.8
4,409,190	+				+0.1
4,409,192	+				+1.3
4,409,192	+				+2.4
4,409,192	+				-0.3
4,409,193	-				+1.5
4,409,193	-				+0.3
4,409,193	-				+0.6
4,409,193	-				-1.5
4,409,193	-				+1.5
4,409,223	+				-1.5
4,409,223	+				-0.8
4,409,224	-				-1.8
4,409,224	-				-2.0
4,409,224	-				-2.5
4,409,264	-				+0.5