Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2774

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
3,360,232	+				-2.2
3,360,232	+				-3.1
3,360,232	+				-1.1
3,360,232	+				+2.1
3,360,233	-				+2.3
3,360,233	-				+2.7
3,360,233	-				-3.0
3,360,325	+				-3.2
3,360,325	+				-1.5
3,360,325	+				-0.5
3,360,325	+				-0.7
3,360,325	+				-0.9
3,360,325	+				-0.1
3,360,325	+				-1.9
3,360,326	-				-0.7
3,360,326	-				-2.1
3,360,326	-				-1.9
3,360,326	-				+0.0
3,360,326	-				-1.7
3,360,326	-				+0.7
3,360,326	-				-0.4
3,360,326	-				-1.1
3,360,326	-				-0.6
3,360,326	-				-2.3
3,360,326	-				+1.1
3,360,326	-				-1.3
3,360,327	+				+1.8
3,360,327	+				+0.2
3,360,327	+				-1.3
3,360,327	+				-0.5
3,360,327	+				-1.3
3,360,327	+				-1.7
3,360,327	+				-0.3
3,360,327	+				+0.2
3,360,327	+				+0.0
3,360,327	+				+1.3
3,360,327	+				-0.7
3,360,327	+				-2.8
3,360,327	+				+0.2
3,360,327	+				-2.6
3,360,327	+				+0.3
3,360,327	+				-1.1
3,360,328	-				-2.5
3,360,328	-				+1.6
3,360,328	-				-2.1
3,360,328	-				-0.1
3,360,328	-				-2.8
3,360,328	-				+0.9
3,360,370	-				+1.3
3,360,370	-				-1.3
3,360,508	-				+0.2
3,360,543	-				-0.6
3,360,548	+				-0.3
3,360,649	-		Psyr_2773	0.17	+1.1
3,360,657	+		Psyr_2773	0.18	-0.3
3,360,657	+		Psyr_2773	0.18	+1.0
3,360,658	-		Psyr_2773	0.18	+2.9
3,360,658	-		Psyr_2773	0.18	+1.9
3,360,658	-		Psyr_2773	0.18	-1.9
3,360,658	-		Psyr_2773	0.18	-0.0
3,360,716	+		Psyr_2773	0.28	+1.5
3,360,717	-		Psyr_2773	0.28	-2.9
3,360,717	-		Psyr_2773	0.28	-0.5
3,360,813	+		Psyr_2773	0.43	-2.3
3,360,814	-		Psyr_2773	0.44	-2.5
3,360,814	-		Psyr_2773	0.44	-0.7
3,360,814	-		Psyr_2773	0.44	+1.0
3,360,814	-		Psyr_2773	0.44	-0.1
3,360,814	-		Psyr_2773	0.44	-0.4
3,360,814	-		Psyr_2773	0.44	-2.5
3,360,817	+		Psyr_2773	0.44	+2.0
3,360,818	-		Psyr_2773	0.44	+1.3
3,360,860	+		Psyr_2773	0.51	-2.1
3,360,860	+		Psyr_2773	0.51	-1.1
3,360,860	+		Psyr_2773	0.51	-2.8
3,360,861	-		Psyr_2773	0.51	-0.6
3,360,861	-		Psyr_2773	0.51	+1.9
3,360,861	-		Psyr_2773	0.51	+0.3
3,360,861	-		Psyr_2773	0.51	+1.9
3,360,861	-		Psyr_2773	0.51	+0.4
3,360,896	-		Psyr_2773	0.57	-3.7
3,360,900	+		Psyr_2773	0.58	-1.1
3,360,900	+		Psyr_2773	0.58	-1.3
3,360,900	+		Psyr_2773	0.58	+0.7
3,360,948	+		Psyr_2773	0.66	-1.2
3,360,948	+		Psyr_2773	0.66	-0.3
3,361,046	-		Psyr_2773	0.82	+2.0
3,361,046	-		Psyr_2773	0.82	+0.1
3,361,061	+		Psyr_2773	0.84	-0.7
3,361,067	+		Psyr_2773	0.85	-0.2
3,361,071	-		Psyr_2773	0.86	-0.6
3,361,107	+				-1.9
3,361,108	-				-2.3
3,361,142	+				-0.3
3,361,143	-				+0.5
3,361,189	-				-0.3
3,361,189	-				-1.0
3,361,189	-				-2.2
3,361,189	-				-1.1
3,361,204	+				-0.7
3,361,205	-				+0.9
3,361,205	-				-0.1
3,361,306	+		Psyr_2774	0.21	-0.1
3,361,306	+		Psyr_2774	0.21	-3.6
3,361,307	-		Psyr_2774	0.21	-1.9
3,361,344	-		Psyr_2774	0.27	-1.3
3,361,754	+				+0.7
3,361,754	+				-1.1
3,361,754	+				+1.1
3,361,755	-				+0.5
3,361,755	-				+2.1
3,361,806	+				-2.2
3,361,806	+				-1.1
3,361,806	+				+0.6
3,361,806	+				+1.4
3,361,807	-				-2.5
3,361,883	+		Psyr_2775	0.19	+2.5
3,361,885	+		Psyr_2775	0.19	-2.1
3,361,885	+		Psyr_2775	0.19	+1.1
3,361,885	+		Psyr_2775	0.19	+0.9
3,361,885	+		Psyr_2775	0.19	-2.7
3,361,885	+		Psyr_2775	0.19	-0.6
3,361,885	+		Psyr_2775	0.19	-1.9
3,361,885	+		Psyr_2775	0.19	+1.9
3,361,886	-		Psyr_2775	0.20	+1.6
3,361,886	-		Psyr_2775	0.20	+1.1
3,361,886	-		Psyr_2775	0.20	+1.1
3,361,886	-		Psyr_2775	0.20	-0.1
3,361,886	-		Psyr_2775	0.20	-1.9
3,361,886	-		Psyr_2775	0.20	-3.4
3,361,886	-		Psyr_2775	0.20	-0.2
3,361,886	-		Psyr_2775	0.20	-2.5
3,361,886	-		Psyr_2775	0.20	+1.3
3,361,886	-		Psyr_2775	0.20	+0.1
3,361,886	-		Psyr_2775	0.20	-1.2
3,361,886	-		Psyr_2775	0.20	-0.5
3,361,886	-		Psyr_2775	0.20	-1.1
3,361,889	+		Psyr_2775	0.21	+0.9
3,362,006	+		Psyr_2775	0.55	+2.1
3,362,006	+		Psyr_2775	0.55	-1.5
3,362,006	+		Psyr_2775	0.55	+1.0
3,362,006	+		Psyr_2775	0.55	+0.3
3,362,060	+		Psyr_2775	0.71	-1.3
3,362,060	+		Psyr_2775	0.71	+0.4
3,362,060	+		Psyr_2775	0.71	+0.9
3,362,060	+		Psyr_2775	0.71	-2.7
3,362,061	-		Psyr_2775	0.72	-2.3
3,362,061	-		Psyr_2775	0.72	-0.7
3,362,061	-		Psyr_2775	0.72	-0.5
3,362,061	-		Psyr_2775	0.72	-0.2
3,362,061	-		Psyr_2775	0.72	+0.9
3,362,072	+		Psyr_2775	0.75	+0.4
3,362,072	+		Psyr_2775	0.75	-3.4
3,362,072	+		Psyr_2775	0.75	-0.5
3,362,072	+		Psyr_2775	0.75	+1.9
3,362,072	+		Psyr_2775	0.75	-0.6
3,362,073	-		Psyr_2775	0.75	-0.5
3,362,073	-		Psyr_2775	0.75	-2.6
3,362,073	-		Psyr_2775	0.75	+2.1
3,362,073	-		Psyr_2775	0.75	+0.8
3,362,087	+		Psyr_2775	0.79	-0.4
3,362,087	+		Psyr_2775	0.79	-0.3
3,362,087	+		Psyr_2775	0.79	-3.2
3,362,088	-		Psyr_2775	0.80	+1.9
3,362,088	-		Psyr_2775	0.80	-1.5
3,362,155	+				+0.5
3,362,165	+				+0.1
3,362,166	-				-1.7
3,362,170	+				+1.9
3,362,170	+				-1.9
3,362,171	-				+2.0
3,362,285	+				+2.1
3,362,285	+				+0.4
3,362,285	+				-0.5
3,362,285	+				-0.7
3,362,286	-				-2.3
3,362,286	-				+0.5
3,362,286	-				-2.5
3,362,286	-				+1.8
3,362,286	-				+1.3
3,362,286	-				-2.4
3,362,342	+				+1.0
3,362,360	+				+1.3
3,362,361	-				+1.1
3,362,361	-				+1.3
3,362,361	-				+1.5
3,362,363	+				+1.7
3,362,363	+				-0.7
3,362,363	+				-2.5
3,362,363	+				+1.4
3,362,363	+				+1.6
3,362,364	-				+1.4
3,362,386	-				-3.6
3,362,447	-				-2.3
3,362,448	+				+1.8
3,362,448	+				-1.9
3,362,449	-				+0.5
3,362,449	-				-2.7
3,362,449	-				+0.1
3,362,516	-		Psyr_2776	0.13	-0.7
3,362,516	-		Psyr_2776	0.13	-2.5
3,362,519	-		Psyr_2776	0.13	+0.5
3,362,519	-		Psyr_2776	0.13	-2.5
3,362,549	-		Psyr_2776	0.18	-0.7
3,362,563	+		Psyr_2776	0.20	-0.1
3,362,605	+		Psyr_2776	0.26	+1.2
3,362,605	+		Psyr_2776	0.26	-2.4
3,362,605	+		Psyr_2776	0.26	-0.6
3,362,605	+		Psyr_2776	0.26	+1.5
3,362,606	-		Psyr_2776	0.26	-2.5
3,362,606	-		Psyr_2776	0.26	+0.8
3,362,606	-		Psyr_2776	0.26	-1.9
3,362,606	-		Psyr_2776	0.26	-0.3
3,362,609	+		Psyr_2776	0.27	-0.8
3,362,610	-		Psyr_2776	0.27	-1.1
3,362,610	-		Psyr_2776	0.27	-2.1
3,362,666	+		Psyr_2776	0.35	-2.1
3,362,668	+		Psyr_2776	0.36	+0.9
3,362,668	+		Psyr_2776	0.36	-1.9
3,362,668	+		Psyr_2776	0.36	-3.5
3,362,668	+		Psyr_2776	0.36	+0.7
3,362,669	-		Psyr_2776	0.36	-1.9
3,362,747	+		Psyr_2776	0.48	-2.8
3,362,748	-		Psyr_2776	0.48	+0.7
3,362,750	+		Psyr_2776	0.48	-3.6