Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1117

Experiment: apoplastic, grinding recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, grinding recovery; Green bean
1,264,910	+		Psyr_1116	0.40	+2.3
1,264,910	+		Psyr_1116	0.40	-2.6
1,264,910	+		Psyr_1116	0.40	+0.8
1,264,910	+		Psyr_1116	0.40	-0.6
1,264,910	+		Psyr_1116	0.40	+0.1
1,264,910	+		Psyr_1116	0.40	+2.1
1,264,910	+		Psyr_1116	0.40	-0.7
1,264,910	+		Psyr_1116	0.40	-1.2
1,264,910	+		Psyr_1116	0.40	+1.1
1,264,911	-		Psyr_1116	0.40	+1.0
1,264,911	-		Psyr_1116	0.40	-2.1
1,265,012	+		Psyr_1116	0.49	+0.7
1,265,012	+		Psyr_1116	0.49	-0.8
1,265,012	+		Psyr_1116	0.49	+1.7
1,265,012	+		Psyr_1116	0.49	-1.2
1,265,012	+		Psyr_1116	0.49	-0.7
1,265,012	+		Psyr_1116	0.49	+0.6
1,265,012	+		Psyr_1116	0.49	+0.3
1,265,012	+		Psyr_1116	0.49	+1.4
1,265,012	+		Psyr_1116	0.49	-3.6
1,265,012	+		Psyr_1116	0.49	+1.0
1,265,013	-		Psyr_1116	0.49	-0.2
1,265,013	-		Psyr_1116	0.49	-1.2
1,265,013	-		Psyr_1116	0.49	+0.3
1,265,013	-		Psyr_1116	0.49	-3.2
1,265,013	-		Psyr_1116	0.49	+0.6
1,265,013	-		Psyr_1116	0.49	+0.4
1,265,013	-		Psyr_1116	0.49	-0.0
1,265,013	-		Psyr_1116	0.49	-0.8
1,265,013	-		Psyr_1116	0.49	-0.5
1,265,013	-		Psyr_1116	0.49	+0.1
1,265,013	-		Psyr_1116	0.49	-0.7
1,265,013	-		Psyr_1116	0.49	-2.1
1,265,013	-		Psyr_1116	0.49	+0.4
1,265,013	-		Psyr_1116	0.49	+0.4
1,265,111	+		Psyr_1116	0.57	+1.4
1,265,111	+		Psyr_1116	0.57	+0.6
1,265,111	+		Psyr_1116	0.57	-2.3
1,265,111	+		Psyr_1116	0.57	+1.3
1,265,111	+		Psyr_1116	0.57	+0.2
1,265,111	+		Psyr_1116	0.57	-2.1
1,265,111	+		Psyr_1116	0.57	+1.7
1,265,112	-		Psyr_1116	0.57	+0.3
1,265,314	+		Psyr_1116	0.75	+0.6
1,265,314	+		Psyr_1116	0.75	-1.2
1,265,314	+		Psyr_1116	0.75	+1.1
1,265,314	+		Psyr_1116	0.75	-3.4
1,265,314	+		Psyr_1116	0.75	+2.5
1,265,314	+		Psyr_1116	0.75	+2.1
1,265,314	+		Psyr_1116	0.75	+0.6
1,265,314	+		Psyr_1116	0.75	+0.2
1,265,315	-		Psyr_1116	0.75	+0.6
1,265,315	-		Psyr_1116	0.75	+1.6
1,265,315	-		Psyr_1116	0.75	-3.1
1,265,315	-		Psyr_1116	0.75	-3.1
1,265,476	+		Psyr_1116	0.88	+1.5
1,265,476	+		Psyr_1116	0.88	+1.1
1,265,477	-		Psyr_1116	0.88	+2.5
1,265,477	-		Psyr_1116	0.88	-3.1
1,265,604	+				+0.8
1,265,605	-				+0.1
1,265,672	+				+0.9
1,265,672	+				+1.8
1,265,672	+				-0.4
1,265,672	+				+0.6
1,265,672	+				-2.3
1,265,672	+				+0.7
1,265,672	+				+1.2
1,265,673	-				-0.2
1,265,673	-				+0.6
1,265,673	-				+2.0
1,265,700	+				-1.6
1,265,709	+				-3.2
1,265,709	+				-1.9
1,265,710	-				+1.4
1,265,712	+				-0.3
1,265,713	-				+0.1
1,265,718	+				+3.2
1,265,718	+				+1.5
1,265,719	-				-1.0
1,265,757	+				+0.8
1,265,757	+				+0.8
1,265,757	+				+1.4
1,265,757	+				+2.3
1,265,758	-				+1.4
1,265,783	+				-0.8
1,265,784	-				-0.5
1,265,784	-				+3.4
1,265,933	-		Psyr_1117	0.14	-2.5
1,265,933	-		Psyr_1117	0.14	-3.4
1,265,933	-		Psyr_1117	0.14	+0.5
1,266,097	-		Psyr_1117	0.26	+0.9
1,266,097	-		Psyr_1117	0.26	+1.0
1,266,208	+		Psyr_1117	0.35	+1.1
1,266,208	+		Psyr_1117	0.35	+0.7
1,266,208	+		Psyr_1117	0.35	+1.4
1,266,209	-		Psyr_1117	0.35	-2.0
1,266,209	-		Psyr_1117	0.35	-2.5
1,266,322	+		Psyr_1117	0.43	-0.3
1,266,322	+		Psyr_1117	0.43	+2.3
1,266,322	+		Psyr_1117	0.43	+0.3
1,266,322	+		Psyr_1117	0.43	+0.6
1,266,322	+		Psyr_1117	0.43	+3.7
1,266,323	-		Psyr_1117	0.43	+0.6
1,266,323	-		Psyr_1117	0.43	-1.9
1,266,323	-		Psyr_1117	0.43	-1.4
1,266,328	-		Psyr_1117	0.43	-3.1
1,266,330	+		Psyr_1117	0.44	-0.8
1,266,330	+		Psyr_1117	0.44	-2.5
1,266,330	+		Psyr_1117	0.44	+1.1
1,266,331	-		Psyr_1117	0.44	+0.6
1,266,331	-		Psyr_1117	0.44	+0.7
1,266,337	+		Psyr_1117	0.44	-0.8
1,266,338	-		Psyr_1117	0.44	+0.4
1,266,348	+		Psyr_1117	0.45	+2.0
1,266,349	-		Psyr_1117	0.45	-0.4
1,266,376	+		Psyr_1117	0.47	-0.4
1,266,376	+		Psyr_1117	0.47	+0.8
1,266,376	+		Psyr_1117	0.47	+0.5
1,266,377	-		Psyr_1117	0.47	+0.6
1,266,377	-		Psyr_1117	0.47	-2.7
1,266,377	-		Psyr_1117	0.47	+1.2
1,266,377	-		Psyr_1117	0.47	-0.1
1,266,377	-		Psyr_1117	0.47	-0.1
1,266,377	-		Psyr_1117	0.47	+0.6
1,266,397	+		Psyr_1117	0.48	-3.3
1,266,398	-		Psyr_1117	0.49	-0.7
1,266,398	-		Psyr_1117	0.49	-1.9
1,266,398	-		Psyr_1117	0.49	+2.2
1,266,398	-		Psyr_1117	0.49	+0.5
1,266,415	+		Psyr_1117	0.50	-0.2
1,266,416	-		Psyr_1117	0.50	-2.7
1,266,556	+		Psyr_1117	0.60	-0.4
1,266,556	+		Psyr_1117	0.60	-2.3
1,266,556	+		Psyr_1117	0.60	+0.2
1,266,556	+		Psyr_1117	0.60	+1.4
1,266,556	+		Psyr_1117	0.60	+0.2
1,266,556	+		Psyr_1117	0.60	+0.2
1,266,556	+		Psyr_1117	0.60	+0.7
1,266,556	+		Psyr_1117	0.60	+1.6
1,266,557	-		Psyr_1117	0.60	+0.7
1,266,557	-		Psyr_1117	0.60	-0.8
1,266,586	+		Psyr_1117	0.62	+1.2
1,266,587	-		Psyr_1117	0.62	-0.0
1,266,772	+		Psyr_1117	0.76	+0.8
1,266,772	+		Psyr_1117	0.76	+2.1
1,266,773	-		Psyr_1117	0.76	-2.0
1,266,773	-		Psyr_1117	0.76	+1.1
1,266,773	-		Psyr_1117	0.76	-0.3
1,266,793	+		Psyr_1117	0.78	+1.2
1,266,793	+				+0.6
1,266,917	-		Psyr_1117	0.87	+0.7
1,266,917	-		Psyr_1117	0.87	-2.8
1,266,955	+		Psyr_1117	0.89	-1.8
1,266,955	+		Psyr_1117	0.89	+2.5
1,266,955	+		Psyr_1117	0.89	+1.9
1,266,955	+		Psyr_1117	0.89	-0.5
1,266,955	+		Psyr_1117	0.89	+0.5
1,266,956	-		Psyr_1117	0.90	-0.0
1,266,956	-		Psyr_1117	0.90	-1.0
1,266,956	-		Psyr_1117	0.90	-0.0
1,266,971	-				+1.0
1,266,973	+				-0.8
1,267,021	+				+1.6
1,267,021	+				+1.6
1,267,021	+				+1.6
1,267,022	-				-1.0
1,267,022	-				+1.3
1,267,022	-				+1.6
1,267,022	-				-2.8
1,267,022	-				+1.7
1,267,043	+				+3.1
1,267,044	-				+0.3
1,267,044	-				-0.2
1,267,100	+				+0.7
1,267,169	-				+1.7
1,267,280	-				-1.0
1,267,280	-				-0.8
1,267,315	-		Psyr_1118	0.12	+1.3
1,267,475	+		Psyr_1118	0.30	+0.6
1,267,709	+		Psyr_1118	0.57	-0.8
1,267,710	-		Psyr_1118	0.57	-2.8
1,267,769	+		Psyr_1118	0.64	-2.3