Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0567 and Psyr_0568 are separated by 26 nucleotides Psyr_0568 and Psyr_0569 are separated by 14 nucleotides Psyr_0569 and Psyr_0570 overlap by 1 nucleotides
Psyr_0567: Psyr_0567 - Protein of unknown function UPF0031:YjeF-related protein, N-terminal, at 644,229 to 645,719
_0567
Psyr_0568: Psyr_0568 - Protein of unknown function UPF0079, at 645,746 to 646,177
_0568
Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607
_0569
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Position (kb) 646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 645.275 kb on + strand, within Psyr_0567 at 645.275 kb on + strand, within Psyr_0567 at 645.275 kb on + strand, within Psyr_0567 at 645.413 kb on + strand, within Psyr_0567 at 645.668 kb on + strand at 645.668 kb on + strand at 645.668 kb on + strand at 645.668 kb on + strand at 645.688 kb on + strand at 646.175 kb on + strand at 646.175 kb on + strand at 646.175 kb on + strand at 646.175 kb on + strand at 646.175 kb on + strand at 646.175 kb on + strand at 646.187 kb on + strand at 646.191 kb on + strand at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.404 kb on + strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.405 kb on - strand, within Psyr_0569 at 647.500 kb on + strand at 647.500 kb on + strand at 647.500 kb on + strand at 647.501 kb on - strand at 647.501 kb on - strand at 647.501 kb on - strand at 647.578 kb on - strand at 647.894 kb on + strand, within Psyr_0570 at 648.106 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.426 kb on + strand, within Psyr_0570 at 648.427 kb on - strand, within Psyr_0570 at 648.427 kb on - strand, within Psyr_0570
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 645,275 + Psyr_0567 0.70 -1.6 645,275 + Psyr_0567 0.70 -1.9 645,275 + Psyr_0567 0.70 +0.6 645,413 + Psyr_0567 0.79 -0.3 645,668 + -0.3 645,668 + -0.4 645,668 + -0.4 645,668 + +0.1 645,688 + +1.2 646,175 + -1.5 646,175 + -1.5 646,175 + -0.8 646,175 + +1.6 646,175 + -2.9 646,175 + +1.0 646,187 + +1.1 646,191 + -2.3 647,404 + Psyr_0569 0.86 -2.0 647,404 + Psyr_0569 0.86 -1.8 647,404 + Psyr_0569 0.86 -3.7 647,404 + Psyr_0569 0.86 -0.0 647,404 + Psyr_0569 0.86 -1.8 647,404 + Psyr_0569 0.86 -0.4 647,404 + Psyr_0569 0.86 +0.4 647,404 + Psyr_0569 0.86 +1.2 647,404 + Psyr_0569 0.86 +1.0 647,404 + Psyr_0569 0.86 -2.7 647,405 - Psyr_0569 0.86 -1.8 647,405 - Psyr_0569 0.86 -1.4 647,405 - Psyr_0569 0.86 -2.5 647,405 - Psyr_0569 0.86 -2.3 647,405 - Psyr_0569 0.86 -1.3 647,405 - Psyr_0569 0.86 -1.9 647,405 - Psyr_0569 0.86 -3.1 647,405 - Psyr_0569 0.86 -2.3 647,405 - Psyr_0569 0.86 -2.3 647,405 - Psyr_0569 0.86 -0.0 647,405 - Psyr_0569 0.86 -2.8 647,500 + -2.0 647,500 + +0.1 647,500 + -1.4 647,501 - -1.9 647,501 - -1.4 647,501 - -0.8 647,578 - +0.7 647,894 + Psyr_0570 0.15 -3.0 648,106 + Psyr_0570 0.26 -0.1 648,426 + Psyr_0570 0.42 +1.3 648,426 + Psyr_0570 0.42 -0.0 648,426 + Psyr_0570 0.42 +2.6 648,426 + Psyr_0570 0.42 -1.3 648,427 - Psyr_0570 0.42 +3.1 648,427 - Psyr_0570 0.42 -1.3
Or see this region's nucleotide sequence