Experiment: apoplastic, grinding recovery; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0138 and Psyr_0139 are separated by 144 nucleotides Psyr_0139 and Psyr_0140 are separated by 1 nucleotides
Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312
_0138
Psyr_0139: Psyr_0139 - extracellular solute-binding protein, family 5, at 149,457 to 151,340
_0139
Psyr_0140: Psyr_0140 - Binding-protein-dependent transport systems inner membrane component, at 151,342 to 152,409
_0140
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 148.461 kb on + strand, within Psyr_0138 at 148.461 kb on + strand, within Psyr_0138 at 148.462 kb on - strand, within Psyr_0138 at 148.473 kb on - strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.494 kb on + strand, within Psyr_0138 at 148.495 kb on - strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.497 kb on + strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.498 kb on - strand, within Psyr_0138 at 148.645 kb on - strand, within Psyr_0138 at 148.748 kb on + strand, within Psyr_0138 at 148.749 kb on - strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.752 kb on + strand, within Psyr_0138 at 148.753 kb on - strand, within Psyr_0138 at 148.765 kb on - strand, within Psyr_0138 at 148.882 kb on - strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.914 kb on + strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.915 kb on - strand, within Psyr_0138 at 148.956 kb on + strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 148.957 kb on - strand, within Psyr_0138 at 149.079 kb on + strand at 149.080 kb on - strand at 149.088 kb on + strand at 149.121 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.150 kb on + strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.151 kb on - strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.192 kb on + strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.193 kb on - strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.229 kb on + strand at 149.230 kb on - strand at 149.230 kb on - strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.301 kb on + strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.302 kb on - strand at 149.332 kb on - strand at 149.332 kb on - strand at 149.439 kb on + strand at 149.440 kb on - strand at 149.559 kb on + strand at 149.559 kb on + strand at 149.560 kb on - strand at 149.560 kb on - strand at 149.604 kb on + strand at 149.673 kb on + strand, within Psyr_0139 at 149.674 kb on - strand, within Psyr_0139 at 149.730 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.766 kb on + strand, within Psyr_0139 at 149.775 kb on + strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.776 kb on - strand, within Psyr_0139 at 149.893 kb on - strand, within Psyr_0139 at 149.931 kb on + strand, within Psyr_0139 at 150.219 kb on + strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.220 kb on - strand, within Psyr_0139 at 150.237 kb on - strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.246 kb on + strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.247 kb on - strand, within Psyr_0139 at 150.249 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.300 kb on + strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139 at 150.301 kb on - strand, within Psyr_0139 at 150.525 kb on + strand, within Psyr_0139 at 150.526 kb on - strand, within Psyr_0139 at 150.526 kb on - strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.543 kb on + strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.544 kb on - strand, within Psyr_0139 at 150.651 kb on + strand, within Psyr_0139 at 150.652 kb on - strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.894 kb on + strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.895 kb on - strand, within Psyr_0139 at 150.921 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.987 kb on + strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.988 kb on - strand, within Psyr_0139 at 150.996 kb on + strand, within Psyr_0139 at 151.117 kb on - strand, within Psyr_0139 at 151.152 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.155 kb on + strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.156 kb on - strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.170 kb on + strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.171 kb on - strand at 151.173 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.236 kb on + strand at 151.237 kb on - strand at 151.336 kb on - strand at 151.336 kb on - strand at 151.351 kb on + strand at 151.351 kb on + strand at 151.352 kb on - strand at 151.352 kb on - strand at 151.585 kb on + strand, within Psyr_0140 at 151.586 kb on - strand, within Psyr_0140 at 151.636 kb on + strand, within Psyr_0140 at 151.636 kb on + strand, within Psyr_0140 at 151.637 kb on - strand, within Psyr_0140 at 151.750 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.900 kb on + strand, within Psyr_0140 at 151.901 kb on - strand, within Psyr_0140 at 151.901 kb on - strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.978 kb on + strand, within Psyr_0140 at 151.979 kb on - strand, within Psyr_0140 at 151.979 kb on - strand, within Psyr_0140 at 152.083 kb on + strand, within Psyr_0140 at 152.131 kb on + strand, within Psyr_0140 at 152.256 kb on + strand, within Psyr_0140 at 152.256 kb on + strand, within Psyr_0140 at 152.257 kb on - strand, within Psyr_0140
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic, grinding recovery; Green bean remove 148,461 + Psyr_0138 0.69 +2.7 148,461 + Psyr_0138 0.69 +1.2 148,462 - Psyr_0138 0.69 +1.7 148,473 - Psyr_0138 0.69 +0.4 148,494 + Psyr_0138 0.70 +1.4 148,494 + Psyr_0138 0.70 +0.3 148,495 - Psyr_0138 0.70 -0.6 148,497 + Psyr_0138 0.70 +0.4 148,497 + Psyr_0138 0.70 -2.5 148,497 + Psyr_0138 0.70 +0.4 148,497 + Psyr_0138 0.70 +2.0 148,497 + Psyr_0138 0.70 +0.9 148,497 + Psyr_0138 0.70 -1.8 148,497 + Psyr_0138 0.70 -2.3 148,497 + Psyr_0138 0.70 +0.6 148,497 + Psyr_0138 0.70 +0.0 148,498 - Psyr_0138 0.70 -1.4 148,498 - Psyr_0138 0.70 +0.2 148,498 - Psyr_0138 0.70 +2.3 148,498 - Psyr_0138 0.70 -3.0 148,498 - Psyr_0138 0.70 +0.1 148,498 - Psyr_0138 0.70 -0.4 148,498 - Psyr_0138 0.70 +1.5 148,498 - Psyr_0138 0.70 -0.8 148,645 - Psyr_0138 0.75 +1.3 148,748 + Psyr_0138 0.79 -2.6 148,749 - Psyr_0138 0.79 +1.8 148,752 + Psyr_0138 0.79 -0.6 148,752 + Psyr_0138 0.79 +0.4 148,753 - Psyr_0138 0.79 -1.1 148,765 - Psyr_0138 0.80 +1.0 148,882 - Psyr_0138 0.84 +0.7 148,914 + Psyr_0138 0.85 -0.1 148,914 + Psyr_0138 0.85 +0.4 148,914 + Psyr_0138 0.85 +0.3 148,914 + Psyr_0138 0.85 -0.0 148,914 + Psyr_0138 0.85 -0.3 148,914 + Psyr_0138 0.85 -3.8 148,914 + Psyr_0138 0.85 +0.1 148,915 - Psyr_0138 0.85 -3.0 148,915 - Psyr_0138 0.85 +1.0 148,915 - Psyr_0138 0.85 +2.0 148,915 - Psyr_0138 0.85 -1.6 148,915 - Psyr_0138 0.85 +0.9 148,915 - Psyr_0138 0.85 -3.3 148,915 - Psyr_0138 0.85 -2.0 148,915 - Psyr_0138 0.85 -2.1 148,956 + Psyr_0138 0.87 -1.3 148,957 - Psyr_0138 0.87 -2.1 148,957 - Psyr_0138 0.87 -1.1 149,079 + +1.0 149,080 - +1.4 149,088 + +0.6 149,121 + +1.2 149,150 + -3.2 149,150 + +0.0 149,150 + -1.3 149,150 + -0.4 149,151 - -0.4 149,151 - +2.6 149,151 - +0.1 149,151 - -0.2 149,192 + -3.4 149,192 + +1.5 149,192 + -2.5 149,192 + -2.6 149,192 + -0.8 149,192 + +1.3 149,192 + -3.6 149,192 + +0.1 149,192 + -0.8 149,192 + -1.4 149,192 + -3.2 149,192 + -0.4 149,192 + +0.3 149,193 - -1.0 149,193 - -1.1 149,193 - -0.6 149,193 - -1.8 149,193 - +0.4 149,193 - +1.3 149,193 - +0.1 149,193 - +0.6 149,229 + +1.0 149,229 + +0.0 149,229 + -2.6 149,229 + -0.8 149,230 - +2.5 149,230 - +3.2 149,301 + +0.2 149,301 + +0.7 149,301 + -0.5 149,302 - +0.2 149,302 - -3.3 149,302 - +0.9 149,332 - +0.3 149,332 - +1.6 149,439 + -2.5 149,440 - +0.9 149,559 + -0.7 149,559 + -3.2 149,560 - +0.9 149,560 - -0.9 149,604 + -2.2 149,673 + Psyr_0139 0.11 -2.4 149,674 - Psyr_0139 0.12 +0.2 149,730 + Psyr_0139 0.14 -3.3 149,766 + Psyr_0139 0.16 +1.7 149,766 + Psyr_0139 0.16 +0.8 149,775 + Psyr_0139 0.17 -0.3 149,776 - Psyr_0139 0.17 -3.0 149,776 - Psyr_0139 0.17 +0.1 149,776 - Psyr_0139 0.17 +1.3 149,776 - Psyr_0139 0.17 +0.6 149,893 - Psyr_0139 0.23 +1.5 149,931 + Psyr_0139 0.25 -1.7 150,219 + Psyr_0139 0.40 -3.4 150,220 - Psyr_0139 0.40 -1.7 150,220 - Psyr_0139 0.40 -3.5 150,220 - Psyr_0139 0.40 -2.0 150,220 - Psyr_0139 0.40 -0.3 150,220 - Psyr_0139 0.40 -3.4 150,237 - Psyr_0139 0.41 -1.6 150,246 + Psyr_0139 0.42 +2.2 150,246 + Psyr_0139 0.42 -0.6 150,246 + Psyr_0139 0.42 -1.0 150,246 + Psyr_0139 0.42 -2.5 150,246 + Psyr_0139 0.42 +2.4 150,247 - Psyr_0139 0.42 -3.8 150,247 - Psyr_0139 0.42 -1.3 150,247 - Psyr_0139 0.42 +1.7 150,247 - Psyr_0139 0.42 +1.1 150,247 - Psyr_0139 0.42 -0.1 150,247 - Psyr_0139 0.42 +0.3 150,247 - Psyr_0139 0.42 -2.0 150,249 + Psyr_0139 0.42 -1.1 150,300 + Psyr_0139 0.45 +1.6 150,300 + Psyr_0139 0.45 -2.2 150,301 - Psyr_0139 0.45 -1.1 150,301 - Psyr_0139 0.45 +3.3 150,525 + Psyr_0139 0.57 -2.2 150,526 - Psyr_0139 0.57 +0.7 150,526 - Psyr_0139 0.57 +1.9 150,543 + Psyr_0139 0.58 -0.8 150,543 + Psyr_0139 0.58 -2.2 150,543 + Psyr_0139 0.58 -2.0 150,543 + Psyr_0139 0.58 -1.9 150,543 + Psyr_0139 0.58 -3.7 150,543 + Psyr_0139 0.58 -2.1 150,543 + Psyr_0139 0.58 -1.3 150,543 + Psyr_0139 0.58 +2.6 150,543 + Psyr_0139 0.58 -2.6 150,544 - Psyr_0139 0.58 +0.7 150,544 - Psyr_0139 0.58 -0.2 150,544 - Psyr_0139 0.58 +0.7 150,544 - Psyr_0139 0.58 +0.8 150,544 - Psyr_0139 0.58 +0.2 150,544 - Psyr_0139 0.58 +0.9 150,651 + Psyr_0139 0.63 -0.4 150,652 - Psyr_0139 0.63 -2.3 150,894 + Psyr_0139 0.76 -2.3 150,894 + Psyr_0139 0.76 +1.4 150,894 + Psyr_0139 0.76 -2.0 150,894 + Psyr_0139 0.76 -2.3 150,895 - Psyr_0139 0.76 +2.0 150,895 - Psyr_0139 0.76 +0.6 150,895 - Psyr_0139 0.76 +0.2 150,895 - Psyr_0139 0.76 +0.9 150,921 + Psyr_0139 0.78 -0.8 150,987 + Psyr_0139 0.81 +1.6 150,987 + Psyr_0139 0.81 -1.7 150,987 + Psyr_0139 0.81 +0.9 150,988 - Psyr_0139 0.81 -1.1 150,988 - Psyr_0139 0.81 -0.2 150,988 - Psyr_0139 0.81 +0.2 150,988 - Psyr_0139 0.81 +0.8 150,988 - Psyr_0139 0.81 -3.1 150,988 - Psyr_0139 0.81 -1.4 150,996 + Psyr_0139 0.82 -2.8 151,117 - Psyr_0139 0.88 +1.7 151,152 + -0.1 151,155 + +2.6 151,155 + -3.2 151,155 + +0.6 151,155 + +2.5 151,155 + +0.0 151,155 + -0.3 151,155 + +1.0 151,155 + -0.3 151,155 + -2.1 151,155 + +0.8 151,155 + -1.8 151,155 + -1.6 151,155 + -2.5 151,155 + -2.2 151,155 + +0.2 151,155 + +1.8 151,155 + -1.3 151,156 - -1.1 151,156 - -2.8 151,156 - +0.7 151,156 - -3.8 151,156 - +0.6 151,156 - -3.4 151,156 - +0.9 151,156 - +0.4 151,156 - -0.3 151,156 - +1.4 151,156 - -0.6 151,156 - -1.4 151,156 - +0.2 151,156 - +2.0 151,156 - +1.9 151,156 - +1.2 151,156 - +1.8 151,156 - +3.1 151,156 - -1.4 151,156 - +0.7 151,156 - -0.2 151,156 - +1.3 151,156 - -0.6 151,170 + +1.1 151,170 + +1.6 151,170 + -2.8 151,170 + +1.5 151,170 + +0.9 151,170 + +1.0 151,170 + -1.8 151,170 + -0.6 151,171 - -3.1 151,171 - -2.4 151,171 - -0.1 151,171 - -1.6 151,171 - -0.1 151,171 - +3.1 151,171 - +1.3 151,171 - +0.7 151,173 + +1.0 151,236 + +0.6 151,236 + +2.8 151,236 + -0.8 151,236 + -0.5 151,237 - +0.2 151,336 - -2.0 151,336 - +1.9 151,351 + +2.7 151,351 + +1.7 151,352 - +2.4 151,352 - +0.2 151,585 + Psyr_0140 0.23 -2.8 151,586 - Psyr_0140 0.23 -2.0 151,636 + Psyr_0140 0.28 -0.2 151,636 + Psyr_0140 0.28 +0.8 151,637 - Psyr_0140 0.28 -0.2 151,750 + Psyr_0140 0.38 -0.5 151,900 + Psyr_0140 0.52 -3.0 151,900 + Psyr_0140 0.52 -1.3 151,900 + Psyr_0140 0.52 -0.0 151,900 + Psyr_0140 0.52 +0.1 151,900 + Psyr_0140 0.52 +0.7 151,900 + Psyr_0140 0.52 +0.7 151,901 - Psyr_0140 0.52 +0.6 151,901 - Psyr_0140 0.52 +1.2 151,978 + Psyr_0140 0.60 +0.7 151,978 + Psyr_0140 0.60 -1.6 151,978 + Psyr_0140 0.60 -0.6 151,978 + Psyr_0140 0.60 -0.1 151,979 - Psyr_0140 0.60 -1.6 151,979 - Psyr_0140 0.60 -2.3 152,083 + Psyr_0140 0.69 +0.2 152,131 + Psyr_0140 0.74 -0.4 152,256 + Psyr_0140 0.86 +2.2 152,256 + Psyr_0140 0.86 +1.9 152,257 - Psyr_0140 0.86 -0.9
Or see this region's nucleotide sequence