Experiment: R2A with FW104 filtrate 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS00315 and LRK54_RS00320 overlap by 4 nucleotides LRK54_RS00320 and LRK54_RS00325 are separated by 3 nucleotides
LRK54_RS00315: LRK54_RS00315 - single-stranded-DNA-specific exonuclease RecJ, at 71,304 to 73,016
_RS00315
LRK54_RS00320: LRK54_RS00320 - phosphoglycerate mutase, at 73,013 to 73,933
_RS00320
LRK54_RS00325: LRK54_RS00325 - ATP-binding cassette domain-containing protein, at 73,937 to 75,958
_RS00325
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.430 kb on + strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.431 kb on - strand, within LRK54_RS00315 at 72.673 kb on + strand, within LRK54_RS00315 at 72.674 kb on - strand, within LRK54_RS00315 at 72.703 kb on + strand, within LRK54_RS00315 at 72.703 kb on + strand, within LRK54_RS00315 at 72.704 kb on - strand, within LRK54_RS00315 at 72.778 kb on + strand, within LRK54_RS00315 at 72.778 kb on + strand, within LRK54_RS00315 at 72.778 kb on + strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.779 kb on - strand, within LRK54_RS00315 at 72.912 kb on + strand at 72.912 kb on + strand at 72.912 kb on + strand at 72.912 kb on + strand at 72.913 kb on - strand at 72.913 kb on - strand at 72.913 kb on - strand at 72.913 kb on - strand at 72.913 kb on - strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.928 kb on + strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 72.929 kb on - strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.008 kb on + strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.009 kb on - strand at 73.601 kb on + strand, within LRK54_RS00320 at 73.601 kb on + strand, within LRK54_RS00320 at 73.602 kb on - strand, within LRK54_RS00320 at 73.685 kb on + strand, within LRK54_RS00320 at 73.686 kb on - strand, within LRK54_RS00320 at 73.686 kb on - strand, within LRK54_RS00320 at 73.812 kb on + strand, within LRK54_RS00320 at 73.813 kb on - strand, within LRK54_RS00320 at 73.813 kb on - strand, within LRK54_RS00320 at 73.813 kb on - strand, within LRK54_RS00320 at 73.813 kb on - strand, within LRK54_RS00320 at 73.813 kb on - strand, within LRK54_RS00320 at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.053 kb on - strand at 74.112 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.113 kb on + strand at 74.114 kb on - strand at 74.114 kb on - strand at 74.114 kb on - strand at 74.114 kb on - strand at 74.114 kb on - strand at 74.277 kb on + strand, within LRK54_RS00325 at 74.277 kb on + strand, within LRK54_RS00325 at 74.277 kb on + strand, within LRK54_RS00325 at 74.277 kb on + strand, within LRK54_RS00325 at 74.277 kb on + strand, within LRK54_RS00325 at 74.278 kb on - strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.666 kb on + strand, within LRK54_RS00325 at 74.667 kb on - strand, within LRK54_RS00325 at 74.667 kb on - strand, within LRK54_RS00325 at 74.667 kb on - strand, within LRK54_RS00325 at 74.667 kb on - strand, within LRK54_RS00325 at 74.667 kb on - strand, within LRK54_RS00325 at 74.685 kb on + strand, within LRK54_RS00325 at 74.685 kb on + strand, within LRK54_RS00325 at 74.685 kb on + strand, within LRK54_RS00325 at 74.685 kb on + strand, within LRK54_RS00325 at 74.685 kb on + strand, within LRK54_RS00325 at 74.686 kb on - strand, within LRK54_RS00325 at 74.686 kb on - strand, within LRK54_RS00325 at 74.687 kb on - strand, within LRK54_RS00325 at 74.818 kb on + strand, within LRK54_RS00325 at 74.818 kb on + strand, within LRK54_RS00325 at 74.818 kb on + strand, within LRK54_RS00325 at 74.818 kb on + strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325 at 74.819 kb on - strand, within LRK54_RS00325
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with FW104 filtrate 0.5 X remove 72,430 + LRK54_RS00315 0.66 +1.6 72,430 + LRK54_RS00315 0.66 +0.9 72,430 + LRK54_RS00315 0.66 +0.1 72,430 + LRK54_RS00315 0.66 +0.1 72,430 + LRK54_RS00315 0.66 +1.2 72,430 + LRK54_RS00315 0.66 +0.6 72,430 + LRK54_RS00315 0.66 -0.2 72,430 + LRK54_RS00315 0.66 -0.7 72,430 + LRK54_RS00315 0.66 -0.6 72,430 + LRK54_RS00315 0.66 -1.3 72,430 + LRK54_RS00315 0.66 -0.5 72,430 + LRK54_RS00315 0.66 +0.0 72,430 + LRK54_RS00315 0.66 -0.3 72,430 + LRK54_RS00315 0.66 -0.5 72,430 + LRK54_RS00315 0.66 +1.3 72,430 + LRK54_RS00315 0.66 +0.1 72,430 + LRK54_RS00315 0.66 -0.8 72,430 + LRK54_RS00315 0.66 -0.6 72,430 + LRK54_RS00315 0.66 +0.0 72,430 + LRK54_RS00315 0.66 -0.0 72,430 + LRK54_RS00315 0.66 +0.3 72,430 + LRK54_RS00315 0.66 -0.9 72,430 + LRK54_RS00315 0.66 -0.1 72,430 + LRK54_RS00315 0.66 +0.6 72,430 + LRK54_RS00315 0.66 +0.6 72,430 + LRK54_RS00315 0.66 +0.2 72,430 + LRK54_RS00315 0.66 -0.4 72,430 + LRK54_RS00315 0.66 -1.1 72,430 + LRK54_RS00315 0.66 +0.4 72,430 + LRK54_RS00315 0.66 -1.2 72,430 + LRK54_RS00315 0.66 +1.2 72,430 + LRK54_RS00315 0.66 +2.1 72,431 - LRK54_RS00315 0.66 -0.7 72,431 - LRK54_RS00315 0.66 -0.7 72,431 - LRK54_RS00315 0.66 +0.5 72,431 - LRK54_RS00315 0.66 -1.0 72,431 - LRK54_RS00315 0.66 +1.4 72,431 - LRK54_RS00315 0.66 +0.5 72,431 - LRK54_RS00315 0.66 -0.9 72,431 - LRK54_RS00315 0.66 -0.2 72,431 - LRK54_RS00315 0.66 -1.3 72,431 - LRK54_RS00315 0.66 -0.0 72,431 - LRK54_RS00315 0.66 -2.1 72,431 - LRK54_RS00315 0.66 -0.4 72,431 - LRK54_RS00315 0.66 -0.4 72,431 - LRK54_RS00315 0.66 -1.4 72,431 - LRK54_RS00315 0.66 -0.2 72,431 - LRK54_RS00315 0.66 +0.8 72,431 - LRK54_RS00315 0.66 +0.3 72,431 - LRK54_RS00315 0.66 +0.1 72,431 - LRK54_RS00315 0.66 -1.5 72,431 - LRK54_RS00315 0.66 +1.8 72,431 - LRK54_RS00315 0.66 -1.2 72,431 - LRK54_RS00315 0.66 +0.2 72,431 - LRK54_RS00315 0.66 +0.3 72,431 - LRK54_RS00315 0.66 +0.7 72,431 - LRK54_RS00315 0.66 +0.1 72,431 - LRK54_RS00315 0.66 +0.4 72,431 - LRK54_RS00315 0.66 -0.7 72,431 - LRK54_RS00315 0.66 -0.7 72,431 - LRK54_RS00315 0.66 -1.0 72,431 - LRK54_RS00315 0.66 -1.7 72,431 - LRK54_RS00315 0.66 +1.4 72,431 - LRK54_RS00315 0.66 -0.6 72,431 - LRK54_RS00315 0.66 -0.0 72,673 + LRK54_RS00315 0.80 -0.2 72,674 - LRK54_RS00315 0.80 -0.3 72,703 + LRK54_RS00315 0.82 -1.3 72,703 + LRK54_RS00315 0.82 -0.8 72,704 - LRK54_RS00315 0.82 -0.0 72,778 + LRK54_RS00315 0.86 -0.6 72,778 + LRK54_RS00315 0.86 -0.0 72,778 + LRK54_RS00315 0.86 -0.5 72,779 - LRK54_RS00315 0.86 -0.1 72,779 - LRK54_RS00315 0.86 +0.1 72,779 - LRK54_RS00315 0.86 -0.3 72,779 - LRK54_RS00315 0.86 -1.1 72,779 - LRK54_RS00315 0.86 -0.0 72,779 - LRK54_RS00315 0.86 +1.2 72,912 + -0.2 72,912 + -0.0 72,912 + +0.1 72,912 + -1.1 72,913 - -0.6 72,913 - -0.1 72,913 - +1.1 72,913 - +0.4 72,913 - +1.1 72,928 + +0.0 72,928 + -1.2 72,928 + -2.0 72,928 + -0.1 72,928 + -0.8 72,928 + +0.1 72,928 + +0.8 72,928 + +0.5 72,928 + +0.4 72,928 + -0.5 72,928 + -0.6 72,928 + -0.9 72,928 + -0.2 72,928 + +0.7 72,929 - -1.0 72,929 - -0.6 72,929 - -0.1 72,929 - +1.4 72,929 - -0.7 72,929 - +1.9 72,929 - -0.4 72,929 - +0.2 72,929 - +0.1 73,008 + -0.1 73,008 + +0.6 73,008 + -1.3 73,008 + -1.5 73,008 + +1.4 73,008 + +0.1 73,008 + -0.0 73,008 + -0.3 73,008 + -0.2 73,009 - +0.9 73,009 - -1.4 73,009 - -0.9 73,009 - +0.3 73,009 - -1.9 73,601 + LRK54_RS00320 0.64 -1.4 73,601 + LRK54_RS00320 0.64 -1.2 73,602 - LRK54_RS00320 0.64 +0.1 73,685 + LRK54_RS00320 0.73 -0.8 73,686 - LRK54_RS00320 0.73 -1.4 73,686 - LRK54_RS00320 0.73 -1.9 73,812 + LRK54_RS00320 0.87 -0.4 73,813 - LRK54_RS00320 0.87 -1.9 73,813 - LRK54_RS00320 0.87 -0.9 73,813 - LRK54_RS00320 0.87 -1.4 73,813 - LRK54_RS00320 0.87 -0.3 73,813 - LRK54_RS00320 0.87 -1.4 74,052 + +0.1 74,052 + +0.2 74,052 + -0.4 74,052 + -0.3 74,052 + +0.3 74,052 + -2.8 74,052 + -0.2 74,052 + +1.0 74,052 + +0.6 74,052 + -0.8 74,052 + -0.9 74,052 + -0.3 74,052 + +0.2 74,052 + -0.1 74,052 + -1.3 74,052 + -1.6 74,052 + -0.5 74,052 + -0.0 74,052 + +0.4 74,052 + +0.4 74,052 + +0.5 74,052 + -0.7 74,052 + +0.6 74,052 + -1.2 74,052 + +0.0 74,053 - -2.5 74,053 - -1.4 74,053 - -0.3 74,053 - +0.2 74,053 - +0.1 74,053 - -0.9 74,053 - +0.2 74,053 - +0.6 74,053 - +0.8 74,053 - +0.5 74,053 - -0.4 74,053 - -0.2 74,053 - -1.2 74,053 - +0.5 74,053 - -0.1 74,053 - +0.8 74,053 - +1.8 74,053 - +0.1 74,053 - -0.2 74,053 - +1.1 74,053 - +2.6 74,053 - +1.1 74,053 - +1.8 74,053 - +1.0 74,053 - -0.6 74,053 - +1.8 74,053 - -0.2 74,112 + +0.1 74,113 + +0.1 74,113 + -1.5 74,113 + -0.3 74,113 + +0.1 74,113 + +0.7 74,113 + +0.4 74,113 + -1.2 74,113 + -0.5 74,114 - -1.0 74,114 - +1.4 74,114 - +0.3 74,114 - -0.7 74,114 - -0.1 74,277 + LRK54_RS00325 0.17 -0.7 74,277 + LRK54_RS00325 0.17 -0.6 74,277 + LRK54_RS00325 0.17 -1.4 74,277 + LRK54_RS00325 0.17 -2.2 74,277 + LRK54_RS00325 0.17 +0.2 74,278 - LRK54_RS00325 0.17 +0.6 74,666 + LRK54_RS00325 0.36 -0.7 74,666 + LRK54_RS00325 0.36 -0.7 74,666 + LRK54_RS00325 0.36 -0.4 74,666 + LRK54_RS00325 0.36 -0.1 74,666 + LRK54_RS00325 0.36 +1.6 74,666 + LRK54_RS00325 0.36 -0.1 74,666 + LRK54_RS00325 0.36 -0.4 74,666 + LRK54_RS00325 0.36 +0.4 74,666 + LRK54_RS00325 0.36 -0.4 74,666 + LRK54_RS00325 0.36 +1.7 74,667 - LRK54_RS00325 0.36 -1.2 74,667 - LRK54_RS00325 0.36 -0.2 74,667 - LRK54_RS00325 0.36 -0.4 74,667 - LRK54_RS00325 0.36 +0.4 74,667 - LRK54_RS00325 0.36 -0.0 74,685 + LRK54_RS00325 0.37 +0.0 74,685 + LRK54_RS00325 0.37 +0.8 74,685 + LRK54_RS00325 0.37 -0.9 74,685 + LRK54_RS00325 0.37 -0.7 74,685 + LRK54_RS00325 0.37 -0.0 74,686 - LRK54_RS00325 0.37 -0.2 74,686 - LRK54_RS00325 0.37 -2.4 74,687 - LRK54_RS00325 0.37 -1.3 74,818 + LRK54_RS00325 0.44 -0.1 74,818 + LRK54_RS00325 0.44 -0.3 74,818 + LRK54_RS00325 0.44 -0.1 74,818 + LRK54_RS00325 0.44 -1.0 74,819 - LRK54_RS00325 0.44 -0.5 74,819 - LRK54_RS00325 0.44 -0.8 74,819 - LRK54_RS00325 0.44 -0.1 74,819 - LRK54_RS00325 0.44 +0.1 74,819 - LRK54_RS00325 0.44 -0.6 74,819 - LRK54_RS00325 0.44 -1.1 74,819 - LRK54_RS00325 0.44 -1.4
Or see this region's nucleotide sequence