Experiment: Fusidic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22870 and HSERO_RS22875 are separated by 30 nucleotides HSERO_RS22875 and HSERO_RS22880 are separated by 200 nucleotides HSERO_RS22880 and HSERO_RS22885 are separated by 110 nucleotides
HSERO_RS22870: HSERO_RS22870 - nicotinate phosphoribosyltransferase, at 5,249,460 to 5,250,662
_RS22870
HSERO_RS22875: HSERO_RS22875 - cysteine hydrolase, at 5,250,693 to 5,251,556
_RS22875
HSERO_RS22880: HSERO_RS22880 - NUDIX hydrolase, at 5,251,757 to 5,252,422
_RS22880
HSERO_RS22885: HSERO_RS22885 - hypothetical protein, at 5,252,533 to 5,252,757
_RS22885
Position (kb) 5250
5251
5252 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5249.708 kb on + strand, within HSERO_RS22870 at 5249.800 kb on - strand, within HSERO_RS22870 at 5249.911 kb on + strand, within HSERO_RS22870 at 5249.984 kb on - strand, within HSERO_RS22870 at 5250.050 kb on + strand, within HSERO_RS22870 at 5250.058 kb on - strand, within HSERO_RS22870 at 5250.058 kb on - strand, within HSERO_RS22870 at 5250.208 kb on + strand, within HSERO_RS22870 at 5250.351 kb on - strand, within HSERO_RS22870 at 5250.451 kb on - strand, within HSERO_RS22870 at 5250.481 kb on + strand, within HSERO_RS22870 at 5250.563 kb on - strand at 5250.691 kb on + strand at 5250.691 kb on + strand at 5250.915 kb on + strand, within HSERO_RS22875 at 5251.009 kb on + strand, within HSERO_RS22875 at 5251.047 kb on - strand, within HSERO_RS22875 at 5251.067 kb on + strand, within HSERO_RS22875 at 5251.086 kb on + strand, within HSERO_RS22875 at 5251.086 kb on + strand, within HSERO_RS22875 at 5251.150 kb on + strand, within HSERO_RS22875 at 5251.165 kb on - strand, within HSERO_RS22875 at 5251.195 kb on + strand, within HSERO_RS22875 at 5251.264 kb on + strand, within HSERO_RS22875 at 5251.332 kb on + strand, within HSERO_RS22875 at 5251.344 kb on - strand, within HSERO_RS22875 at 5251.606 kb on - strand at 5251.676 kb on + strand at 5251.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml remove 5,249,708 + HSERO_RS22870 0.21 -0.4 5,249,800 - HSERO_RS22870 0.28 +0.5 5,249,911 + HSERO_RS22870 0.37 -1.0 5,249,984 - HSERO_RS22870 0.44 -2.6 5,250,050 + HSERO_RS22870 0.49 -4.1 5,250,058 - HSERO_RS22870 0.50 -1.1 5,250,058 - HSERO_RS22870 0.50 +0.6 5,250,208 + HSERO_RS22870 0.62 -0.5 5,250,351 - HSERO_RS22870 0.74 +1.2 5,250,451 - HSERO_RS22870 0.82 -0.7 5,250,481 + HSERO_RS22870 0.85 -0.1 5,250,563 - -1.0 5,250,691 + +1.5 5,250,691 + -0.6 5,250,915 + HSERO_RS22875 0.26 -0.4 5,251,009 + HSERO_RS22875 0.37 -0.9 5,251,047 - HSERO_RS22875 0.41 +0.1 5,251,067 + HSERO_RS22875 0.43 -0.1 5,251,086 + HSERO_RS22875 0.45 +0.3 5,251,086 + HSERO_RS22875 0.45 +0.9 5,251,150 + HSERO_RS22875 0.53 -1.6 5,251,165 - HSERO_RS22875 0.55 -0.0 5,251,195 + HSERO_RS22875 0.58 -1.8 5,251,264 + HSERO_RS22875 0.66 -1.2 5,251,332 + HSERO_RS22875 0.74 -1.9 5,251,344 - HSERO_RS22875 0.75 -0.1 5,251,606 - +0.7 5,251,676 + +0.7 5,251,741 - +1.3
Or see this region's nucleotide sequence