Experiment: Fusidic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22215 and HSERO_RS22220 are separated by 134 nucleotides HSERO_RS22220 and HSERO_RS22225 are separated by 134 nucleotides
HSERO_RS22215: HSERO_RS22215 - branched-chain amino acid ABC transporter permease, at 5,079,526 to 5,080,497
_RS22215
HSERO_RS22220: HSERO_RS22220 - D-ribose transporter ATP-binding protein, at 5,080,632 to 5,082,146
_RS22220
HSERO_RS22225: HSERO_RS22225 - ABC transporter substrate-binding protein, at 5,082,281 to 5,083,258
_RS22225
Position (kb) 5080
5081
5082
5083 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5079.818 kb on + strand, within HSERO_RS22215 at 5079.825 kb on + strand, within HSERO_RS22215 at 5079.826 kb on - strand, within HSERO_RS22215 at 5080.019 kb on - strand, within HSERO_RS22215 at 5080.441 kb on - strand at 5080.478 kb on + strand at 5080.481 kb on - strand at 5080.685 kb on - strand at 5080.698 kb on + strand at 5080.712 kb on - strand at 5080.769 kb on + strand at 5080.771 kb on + strand at 5080.895 kb on + strand, within HSERO_RS22220 at 5080.900 kb on + strand, within HSERO_RS22220 at 5081.029 kb on - strand, within HSERO_RS22220 at 5081.250 kb on - strand, within HSERO_RS22220 at 5081.475 kb on + strand, within HSERO_RS22220 at 5081.483 kb on + strand, within HSERO_RS22220 at 5081.503 kb on + strand, within HSERO_RS22220 at 5081.503 kb on + strand, within HSERO_RS22220 at 5081.511 kb on - strand, within HSERO_RS22220 at 5081.643 kb on - strand, within HSERO_RS22220 at 5081.684 kb on + strand, within HSERO_RS22220 at 5081.853 kb on - strand, within HSERO_RS22220 at 5081.985 kb on - strand, within HSERO_RS22220 at 5081.987 kb on + strand, within HSERO_RS22220 at 5081.987 kb on + strand, within HSERO_RS22220 at 5082.054 kb on - strand at 5082.219 kb on - strand at 5082.460 kb on + strand, within HSERO_RS22225 at 5082.779 kb on + strand, within HSERO_RS22225 at 5082.915 kb on + strand, within HSERO_RS22225 at 5082.941 kb on - strand, within HSERO_RS22225 at 5082.946 kb on + strand, within HSERO_RS22225 at 5082.980 kb on + strand, within HSERO_RS22225
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml remove 5,079,818 + HSERO_RS22215 0.30 -0.0 5,079,825 + HSERO_RS22215 0.31 +0.3 5,079,826 - HSERO_RS22215 0.31 +0.5 5,080,019 - HSERO_RS22215 0.51 +1.1 5,080,441 - -1.7 5,080,478 + -0.2 5,080,481 - -2.4 5,080,685 - +0.4 5,080,698 + +0.7 5,080,712 - +0.5 5,080,769 + +0.4 5,080,771 + +0.1 5,080,895 + HSERO_RS22220 0.17 -0.8 5,080,900 + HSERO_RS22220 0.18 +1.5 5,081,029 - HSERO_RS22220 0.26 -0.5 5,081,250 - HSERO_RS22220 0.41 +0.2 5,081,475 + HSERO_RS22220 0.56 -0.6 5,081,483 + HSERO_RS22220 0.56 -0.2 5,081,503 + HSERO_RS22220 0.57 -1.0 5,081,503 + HSERO_RS22220 0.57 +0.3 5,081,511 - HSERO_RS22220 0.58 -2.8 5,081,643 - HSERO_RS22220 0.67 -1.3 5,081,684 + HSERO_RS22220 0.69 -3.1 5,081,853 - HSERO_RS22220 0.81 +0.6 5,081,985 - HSERO_RS22220 0.89 -0.4 5,081,987 + HSERO_RS22220 0.89 -0.3 5,081,987 + HSERO_RS22220 0.89 -0.4 5,082,054 - +1.0 5,082,219 - +2.6 5,082,460 + HSERO_RS22225 0.18 -0.1 5,082,779 + HSERO_RS22225 0.51 +1.1 5,082,915 + HSERO_RS22225 0.65 +0.3 5,082,941 - HSERO_RS22225 0.67 +0.4 5,082,946 + HSERO_RS22225 0.68 +0.2 5,082,980 + HSERO_RS22225 0.71 +0.1
Or see this region's nucleotide sequence