Experiment: Fusidic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20860 and HSERO_RS20865 are separated by 44 nucleotides HSERO_RS20865 and HSERO_RS20870 are separated by 143 nucleotides
HSERO_RS20860: HSERO_RS20860 - hypothetical protein, at 4,772,449 to 4,773,309
_RS20860
HSERO_RS20865: HSERO_RS20865 - ABC transporter permease, at 4,773,354 to 4,774,613
_RS20865
HSERO_RS20870: HSERO_RS20870 - hypothetical protein, at 4,774,757 to 4,775,872
_RS20870
Position (kb) 4773
4774
4775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4772.463 kb on + strand at 4772.470 kb on - strand at 4772.507 kb on - strand at 4772.633 kb on + strand, within HSERO_RS20860 at 4772.641 kb on - strand, within HSERO_RS20860 at 4772.641 kb on - strand, within HSERO_RS20860 at 4772.754 kb on + strand, within HSERO_RS20860 at 4772.762 kb on - strand, within HSERO_RS20860 at 4773.007 kb on - strand, within HSERO_RS20860 at 4773.017 kb on - strand, within HSERO_RS20860 at 4773.158 kb on + strand, within HSERO_RS20860 at 4773.158 kb on + strand, within HSERO_RS20860 at 4773.209 kb on - strand, within HSERO_RS20860 at 4773.314 kb on - strand at 4773.340 kb on - strand at 4773.382 kb on + strand at 4773.414 kb on - strand at 4773.529 kb on - strand, within HSERO_RS20865 at 4773.542 kb on - strand, within HSERO_RS20865 at 4773.545 kb on + strand, within HSERO_RS20865 at 4773.688 kb on + strand, within HSERO_RS20865 at 4773.779 kb on - strand, within HSERO_RS20865 at 4773.797 kb on + strand at 4773.838 kb on + strand, within HSERO_RS20865 at 4773.846 kb on - strand, within HSERO_RS20865 at 4773.874 kb on + strand, within HSERO_RS20865 at 4774.097 kb on + strand, within HSERO_RS20865 at 4774.225 kb on - strand, within HSERO_RS20865 at 4774.309 kb on - strand, within HSERO_RS20865 at 4774.786 kb on - strand at 4774.796 kb on - strand at 4774.811 kb on + strand at 4774.876 kb on - strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.016 kb on + strand, within HSERO_RS20870 at 4775.071 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.161 kb on + strand, within HSERO_RS20870 at 4775.210 kb on + strand, within HSERO_RS20870 at 4775.228 kb on + strand, within HSERO_RS20870 at 4775.251 kb on - strand, within HSERO_RS20870 at 4775.294 kb on - strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.301 kb on + strand, within HSERO_RS20870 at 4775.433 kb on - strand, within HSERO_RS20870 at 4775.539 kb on + strand, within HSERO_RS20870
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml remove 4,772,463 + -1.0 4,772,470 - +0.8 4,772,507 - -4.5 4,772,633 + HSERO_RS20860 0.21 -0.7 4,772,641 - HSERO_RS20860 0.22 +0.6 4,772,641 - HSERO_RS20860 0.22 +0.0 4,772,754 + HSERO_RS20860 0.35 -1.9 4,772,762 - HSERO_RS20860 0.36 -3.1 4,773,007 - HSERO_RS20860 0.65 -0.7 4,773,017 - HSERO_RS20860 0.66 -1.6 4,773,158 + HSERO_RS20860 0.82 +0.2 4,773,158 + HSERO_RS20860 0.82 +0.5 4,773,209 - HSERO_RS20860 0.88 -0.4 4,773,314 - +0.7 4,773,340 - -0.2 4,773,382 + +1.1 4,773,414 - -0.9 4,773,529 - HSERO_RS20865 0.14 -0.2 4,773,542 - HSERO_RS20865 0.15 -0.7 4,773,545 + HSERO_RS20865 0.15 -0.0 4,773,688 + HSERO_RS20865 0.27 -0.4 4,773,779 - HSERO_RS20865 0.34 +0.7 4,773,797 + +4.1 4,773,838 + HSERO_RS20865 0.38 -0.3 4,773,846 - HSERO_RS20865 0.39 +0.9 4,773,874 + HSERO_RS20865 0.41 +0.5 4,774,097 + HSERO_RS20865 0.59 +0.7 4,774,225 - HSERO_RS20865 0.69 -1.3 4,774,309 - HSERO_RS20865 0.76 -1.1 4,774,786 - -0.6 4,774,796 - +0.1 4,774,811 + -0.3 4,774,876 - HSERO_RS20870 0.11 -0.9 4,775,016 + HSERO_RS20870 0.23 -3.1 4,775,016 + HSERO_RS20870 0.23 -0.3 4,775,071 + HSERO_RS20870 0.28 -0.6 4,775,161 + HSERO_RS20870 0.36 +0.4 4,775,161 + HSERO_RS20870 0.36 -0.6 4,775,210 + HSERO_RS20870 0.41 +0.3 4,775,228 + HSERO_RS20870 0.42 -0.6 4,775,251 - HSERO_RS20870 0.44 +0.4 4,775,294 - HSERO_RS20870 0.48 -0.4 4,775,301 + HSERO_RS20870 0.49 -1.3 4,775,301 + HSERO_RS20870 0.49 -0.9 4,775,433 - HSERO_RS20870 0.61 +0.8 4,775,539 + HSERO_RS20870 0.70 +0.6
Or see this region's nucleotide sequence