Experiment: Fusidic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19915 and HSERO_RS19920 are separated by 269 nucleotides HSERO_RS19920 and HSERO_RS19925 are separated by 19 nucleotides HSERO_RS19925 and HSERO_RS19930 are separated by 100 nucleotides
HSERO_RS19915: HSERO_RS19915 - IclR family transcriptional regulator, at 4,571,071 to 4,571,871
_RS19915
HSERO_RS19920: HSERO_RS19920 - protocatechuate 3,4-dioxygenase subunit beta, at 4,572,141 to 4,572,833
_RS19920
HSERO_RS19925: HSERO_RS19925 - protocatechuate 3,4-dioxygenase, at 4,572,853 to 4,573,365
_RS19925
HSERO_RS19930: HSERO_RS19930 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,573,466 to 4,574,833
_RS19930
Position (kb) 4572
4573
4574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4572.006 kb on + strand at 4572.054 kb on - strand at 4572.172 kb on + strand at 4572.190 kb on - strand at 4572.312 kb on - strand, within HSERO_RS19920 at 4572.422 kb on + strand, within HSERO_RS19920 at 4572.614 kb on + strand, within HSERO_RS19920 at 4572.653 kb on - strand, within HSERO_RS19920 at 4572.680 kb on - strand, within HSERO_RS19920 at 4572.861 kb on + strand at 4572.869 kb on - strand at 4572.901 kb on + strand at 4573.191 kb on - strand, within HSERO_RS19925 at 4573.643 kb on - strand, within HSERO_RS19930 at 4573.733 kb on + strand, within HSERO_RS19930 at 4573.808 kb on + strand, within HSERO_RS19930 at 4574.142 kb on + strand, within HSERO_RS19930 at 4574.150 kb on - strand, within HSERO_RS19930 at 4574.358 kb on + strand, within HSERO_RS19930
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml remove 4,572,006 + -0.6 4,572,054 - +0.8 4,572,172 + -0.6 4,572,190 - -0.1 4,572,312 - HSERO_RS19920 0.25 -0.6 4,572,422 + HSERO_RS19920 0.41 +0.6 4,572,614 + HSERO_RS19920 0.68 +0.5 4,572,653 - HSERO_RS19920 0.74 -0.4 4,572,680 - HSERO_RS19920 0.78 -2.6 4,572,861 + +1.9 4,572,869 - -2.2 4,572,901 + +0.6 4,573,191 - HSERO_RS19925 0.66 +0.2 4,573,643 - HSERO_RS19930 0.13 +0.6 4,573,733 + HSERO_RS19930 0.20 -0.5 4,573,808 + HSERO_RS19930 0.25 -0.6 4,574,142 + HSERO_RS19930 0.49 -0.6 4,574,150 - HSERO_RS19930 0.50 -0.2 4,574,358 + HSERO_RS19930 0.65 -0.2
Or see this region's nucleotide sequence