Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15295

Experiment: Fusidic 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.025 mg/ml
3,503,330	-		HSERO_RS15290	0.57	+1.0
3,503,458	+		HSERO_RS15290	0.68	-1.1
3,503,466	-		HSERO_RS15290	0.69	-0.2
3,503,810	-				-0.4
3,503,838	+				+0.4
3,503,871	+				-0.6
3,503,920	+				+1.0
3,503,930	+				-3.1
3,503,938	-				+0.7
3,503,938	-				-0.4
3,504,049	+				+0.5
3,504,057	-				+0.6
3,504,057	-				-0.2
3,504,068	-				-2.3
3,504,194	-				-0.4
3,504,194	-				-0.7
3,504,194	-				-1.1
3,504,196	+				-0.6
3,504,236	+				+0.8
3,504,236	+				-1.3
3,504,246	+				-3.5
3,504,246	-				-0.0
3,504,289	-				+1.2
3,504,301	-				-0.9
3,504,327	-				-0.3
3,504,418	+				+0.2
3,504,616	-		HSERO_RS15295	0.20	+0.5
3,504,643	-		HSERO_RS15295	0.21	-0.3
3,504,704	-		HSERO_RS15295	0.25	+0.4
3,504,736	-		HSERO_RS15295	0.27	-1.2
3,504,811	-		HSERO_RS15295	0.31	-1.5
3,504,811	-		HSERO_RS15295	0.31	-0.7
3,504,904	-		HSERO_RS15295	0.37	-2.5
3,504,931	+		HSERO_RS15295	0.38	-0.3
3,505,069	-		HSERO_RS15295	0.46	+0.2
3,505,081	+		HSERO_RS15295	0.47	+1.0
3,505,182	+		HSERO_RS15295	0.53	-1.0
3,505,190	-		HSERO_RS15295	0.53	-0.0
3,505,210	-		HSERO_RS15295	0.54	+0.1
3,505,395	+		HSERO_RS15295	0.65	+0.8
3,505,442	+		HSERO_RS15295	0.68	-3.1
3,505,477	+		HSERO_RS15295	0.70	-0.4
3,505,506	-		HSERO_RS15295	0.72	-3.6
3,505,680	+		HSERO_RS15295	0.82	+0.8
3,505,690	+		HSERO_RS15295	0.82	-1.6
3,505,849	+				+0.9
3,505,849	+				+0.1
3,505,849	+				-0.9
3,505,958	-				-0.1
3,505,997	+				-0.6
3,505,997	+				-0.2
3,505,997	+				-2.3
3,506,033	+				+1.0
3,506,149	-		HSERO_RS15300	0.13	+0.5
3,506,159	-		HSERO_RS15300	0.14	+2.7
3,506,186	-		HSERO_RS15300	0.18	-0.2
3,506,250	+		HSERO_RS15300	0.28	-1.8
3,506,250	+		HSERO_RS15300	0.28	-0.3
3,506,258	-		HSERO_RS15300	0.29	+0.5
3,506,258	-		HSERO_RS15300	0.29	-1.1
3,506,280	+		HSERO_RS15300	0.32	+1.0
3,506,280	+		HSERO_RS15300	0.32	+0.6
3,506,288	-		HSERO_RS15300	0.33	-0.2
3,506,288	-		HSERO_RS15300	0.33	-0.4
3,506,293	-		HSERO_RS15300	0.34	-0.2
3,506,298	+		HSERO_RS15300	0.34	+0.5
3,506,303	-		HSERO_RS15300	0.35	+0.7
3,506,336	+		HSERO_RS15300	0.40	-1.5
3,506,353	-		HSERO_RS15300	0.42	+1.1
3,506,382	-		HSERO_RS15300	0.47	+1.6
3,506,445	-		HSERO_RS15300	0.56	+0.4
3,506,445	-		HSERO_RS15300	0.56	-1.6
3,506,445	-		HSERO_RS15300	0.56	+0.3
3,506,455	-		HSERO_RS15300	0.57	+3.2
3,506,580	+		HSERO_RS15300	0.75	-0.2
3,506,766	+				+0.3
3,506,952	+		HSERO_RS15305	0.25	-2.0
3,506,965	-		HSERO_RS15305	0.27	-1.4