Experiment: Fusidic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08710 and HSERO_RS08715 are separated by 2 nucleotides HSERO_RS08715 and HSERO_RS08720 are separated by 19 nucleotides HSERO_RS08720 and HSERO_RS08725 are separated by 168 nucleotides
HSERO_RS08710: HSERO_RS08710 - methyltransferase, at 1,975,764 to 1,977,110
_RS08710
HSERO_RS08715: HSERO_RS08715 - 2-dehydro-3-deoxygluconokinase, at 1,977,113 to 1,978,039
_RS08715
HSERO_RS08720: HSERO_RS08720 - amino acid deaminase, at 1,978,059 to 1,979,351
_RS08720
HSERO_RS08725: HSERO_RS08725 - transcriptional regulator, at 1,979,520 to 1,980,404
_RS08725
Position (kb) 1978
1979
1980 Strain fitness (log2 ratio) -2
-1
0
1 at 1977.117 kb on - strand at 1977.216 kb on - strand, within HSERO_RS08715 at 1977.246 kb on + strand, within HSERO_RS08715 at 1977.248 kb on + strand, within HSERO_RS08715 at 1977.318 kb on - strand, within HSERO_RS08715 at 1977.374 kb on - strand, within HSERO_RS08715 at 1977.501 kb on - strand, within HSERO_RS08715 at 1977.885 kb on + strand, within HSERO_RS08715 at 1977.890 kb on + strand, within HSERO_RS08715 at 1977.959 kb on - strand at 1978.520 kb on - strand, within HSERO_RS08720 at 1978.635 kb on + strand, within HSERO_RS08720 at 1978.652 kb on + strand, within HSERO_RS08720 at 1978.707 kb on + strand, within HSERO_RS08720 at 1979.163 kb on + strand, within HSERO_RS08720 at 1979.253 kb on - strand at 1979.253 kb on - strand at 1979.514 kb on - strand at 1979.561 kb on + strand at 1979.607 kb on - strand at 1979.607 kb on - strand at 1979.699 kb on + strand, within HSERO_RS08725 at 1979.837 kb on + strand, within HSERO_RS08725 at 1979.911 kb on - strand, within HSERO_RS08725 at 1979.932 kb on + strand, within HSERO_RS08725
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml remove 1,977,117 - +0.1 1,977,216 - HSERO_RS08715 0.11 +0.5 1,977,246 + HSERO_RS08715 0.14 +0.1 1,977,248 + HSERO_RS08715 0.15 -0.6 1,977,318 - HSERO_RS08715 0.22 -0.0 1,977,374 - HSERO_RS08715 0.28 +0.1 1,977,501 - HSERO_RS08715 0.42 +0.0 1,977,885 + HSERO_RS08715 0.83 +0.4 1,977,890 + HSERO_RS08715 0.84 -0.6 1,977,959 - -0.0 1,978,520 - HSERO_RS08720 0.36 -0.7 1,978,635 + HSERO_RS08720 0.45 -1.0 1,978,652 + HSERO_RS08720 0.46 -0.0 1,978,707 + HSERO_RS08720 0.50 +0.1 1,979,163 + HSERO_RS08720 0.85 +0.3 1,979,253 - -0.5 1,979,253 - -2.3 1,979,514 - -0.7 1,979,561 + -2.2 1,979,607 - -1.2 1,979,607 - +0.3 1,979,699 + HSERO_RS08725 0.20 +1.0 1,979,837 + HSERO_RS08725 0.36 -1.6 1,979,911 - HSERO_RS08725 0.44 +0.5 1,979,932 + HSERO_RS08725 0.47 +1.4
Or see this region's nucleotide sequence