Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06945

Experiment: Fusidic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06940 and HSERO_RS06945 are separated by 335 nucleotidesHSERO_RS06945 and HSERO_RS06950 are separated by 164 nucleotides HSERO_RS06940: HSERO_RS06940 - 23S rRNA methyltransferase, at 1,579,688 to 1,580,335 _RS06940 HSERO_RS06945: HSERO_RS06945 - ATP-dependent metalloprotease, at 1,580,671 to 1,582,560 _RS06945 HSERO_RS06950: HSERO_RS06950 - dihydropteroate synthase, at 1,582,725 to 1,583,573 _RS06950 Position (kb) 1580 1581 1582 1583Strain fitness (log2 ratio) -3 -2 -1 0 1at 1579.691 kb on + strandat 1579.743 kb on + strandat 1580.052 kb on + strand, within HSERO_RS06940at 1580.052 kb on + strand, within HSERO_RS06940at 1580.087 kb on + strand, within HSERO_RS06940at 1580.304 kb on - strandat 1580.489 kb on + strandat 1580.574 kb on - strandat 1580.595 kb on + strandat 1580.603 kb on - strandat 1582.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml
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1,579,691 + +0.6
1,579,743 + -0.5
1,580,052 + HSERO_RS06940 0.56 -2.3
1,580,052 + HSERO_RS06940 0.56 -0.9
1,580,087 + HSERO_RS06940 0.62 -3.3
1,580,304 - -2.2
1,580,489 + +1.1
1,580,574 - +0.9
1,580,595 + -0.3
1,580,603 - +0.3
1,582,591 + +1.1

Or see this region's nucleotide sequence