Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06930

Experiment: Fusidic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06925 and HSERO_RS06930 are separated by 402 nucleotidesHSERO_RS06930 and HSERO_RS06935 are separated by 174 nucleotidesHSERO_RS06935 and HSERO_RS06940 are separated by 76 nucleotides HSERO_RS06925: HSERO_RS06925 - carbamoyl phosphate synthase large subunit, at 1,574,866 to 1,578,099 _RS06925 HSERO_RS06930: HSERO_RS06930 - transcription elongation factor GreA, at 1,578,502 to 1,578,978 _RS06930 HSERO_RS06935: HSERO_RS06935 - RNA-binding protein, at 1,579,153 to 1,579,611 _RS06935 HSERO_RS06940: HSERO_RS06940 - 23S rRNA methyltransferase, at 1,579,688 to 1,580,335 _RS06940 Position (kb) 1578 1579Strain fitness (log2 ratio) -1 0 1at 1578.248 kb on + strandat 1578.967 kb on + strandat 1579.196 kb on + strandat 1579.196 kb on - strandat 1579.402 kb on - strand, within HSERO_RS06935at 1579.476 kb on - strand, within HSERO_RS06935at 1579.691 kb on + strandat 1579.743 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml
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1,578,248 + +0.2
1,578,967 + +0.0
1,579,196 + +0.4
1,579,196 - -0.2
1,579,402 - HSERO_RS06935 0.54 -0.3
1,579,476 - HSERO_RS06935 0.70 +0.1
1,579,691 + +0.6
1,579,743 + -0.5

Or see this region's nucleotide sequence