Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05520

Experiment: Fusidic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05515 and HSERO_RS05520 are separated by 353 nucleotidesHSERO_RS05520 and HSERO_RS05525 overlap by 4 nucleotidesHSERO_RS05525 and HSERO_RS05530 are separated by 214 nucleotides HSERO_RS05515: HSERO_RS05515 - glucose-6-phosphate isomerase, at 1,248,665 to 1,250,329 _RS05515 HSERO_RS05520: HSERO_RS05520 - phosphogluconate dehydratase, at 1,250,683 to 1,252,554 _RS05520 HSERO_RS05525: HSERO_RS05525 - ketohydroxyglutarate aldolase, at 1,252,551 to 1,253,180 _RS05525 HSERO_RS05530: HSERO_RS05530 - prolipoprotein diacylglyceryl transferase, at 1,253,395 to 1,254,231 _RS05530 Position (kb) 1250 1251 1252 1253Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1250.012 kb on + strand, within HSERO_RS05515at 1250.616 kb on - strandat 1253.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml
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1,250,012 + HSERO_RS05515 0.81 -4.1
1,250,616 - +0.3
1,253,442 + -0.3

Or see this region's nucleotide sequence