Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04415

Experiment: Fusidic 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS04390 and HSERO_RS04395 are separated by 88 nucleotidesHSERO_RS04395 and HSERO_RS04400 are separated by 79 nucleotidesHSERO_RS04400 and HSERO_RS04405 overlap by 63 nucleotidesHSERO_RS04405 and HSERO_RS04410 overlap by 10 nucleotidesHSERO_RS04410 and HSERO_RS04415 overlap by 8 nucleotidesHSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotidesHSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotides HSERO_RS04390: HSERO_RS04390 - hypothetical protein, at 973,884 to 974,237 _RS04390 HSERO_RS04395: HSERO_RS04395 - hypothetical protein, at 974,326 to 974,532 _RS04395 HSERO_RS04400: HSERO_RS04400 - transcriptional regulator, at 974,612 to 974,806 _RS04400 HSERO_RS04405: HSERO_RS04405 - transcriptional regulator, at 974,744 to 974,872 _RS04405 HSERO_RS04410: HSERO_RS04410 - hypothetical protein, at 974,863 to 975,060 _RS04410 HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295 _RS04415 HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046 _RS04420 HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833 _RS04425 Position (kb) 975 976Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 974.118 kb on + strand, within HSERO_RS04390at 974.341 kb on - strandat 974.527 kb on + strandat 974.551 kb on + strandat 974.627 kb on + strandat 974.635 kb on - strand, within HSERO_RS04400at 974.708 kb on + strand, within HSERO_RS04400at 974.708 kb on + strand, within HSERO_RS04400at 974.708 kb on + strand, within HSERO_RS04400at 974.716 kb on - strand, within HSERO_RS04400at 974.736 kb on - strand, within HSERO_RS04400at 974.747 kb on + strandat 974.755 kb on - strandat 974.813 kb on + strand, within HSERO_RS04405at 974.821 kb on - strand, within HSERO_RS04405at 974.861 kb on + strandat 974.908 kb on - strand, within HSERO_RS04410at 974.940 kb on - strand, within HSERO_RS04410at 975.014 kb on + strand, within HSERO_RS04410at 975.014 kb on + strandat 975.022 kb on - strand, within HSERO_RS04410at 975.022 kb on - strand, within HSERO_RS04410at 975.035 kb on + strand, within HSERO_RS04410at 975.035 kb on + strand, within HSERO_RS04410at 975.045 kb on + strandat 975.125 kb on - strand, within HSERO_RS04415at 975.146 kb on - strand, within HSERO_RS04415at 975.153 kb on + strandat 975.153 kb on + strand, within HSERO_RS04415at 975.153 kb on + strand, within HSERO_RS04415at 975.161 kb on - strand, within HSERO_RS04415at 975.161 kb on - strand, within HSERO_RS04415at 975.161 kb on - strand, within HSERO_RS04415at 975.161 kb on - strand, within HSERO_RS04415at 975.163 kb on + strand, within HSERO_RS04415at 975.163 kb on + strand, within HSERO_RS04415at 975.171 kb on - strand, within HSERO_RS04415at 975.171 kb on - strand, within HSERO_RS04415at 975.171 kb on - strandat 975.171 kb on - strand, within HSERO_RS04415at 975.173 kb on - strand, within HSERO_RS04415at 975.173 kb on - strand, within HSERO_RS04415at 975.173 kb on - strand, within HSERO_RS04415at 975.183 kb on + strand, within HSERO_RS04415at 975.301 kb on + strandat 975.310 kb on - strandat 975.310 kb on - strandat 975.335 kb on - strandat 975.352 kb on - strandat 975.396 kb on + strandat 975.396 kb on + strandat 975.404 kb on - strandat 975.404 kb on - strandat 976.066 kb on + strandat 976.082 kb on + strandat 976.089 kb on + strandat 976.089 kb on + strandat 976.089 kb on - strandat 976.091 kb on + strandat 976.094 kb on - strandat 976.094 kb on - strandat 976.094 kb on - strandat 976.097 kb on - strandat 976.099 kb on - strandat 976.099 kb on - strandat 976.127 kb on + strandat 976.127 kb on + strandat 976.136 kb on - strandat 976.141 kb on + strandat 976.141 kb on - strandat 976.141 kb on - strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.147 kb on + strandat 976.149 kb on + strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.155 kb on - strandat 976.168 kb on - strandat 976.168 kb on - strandat 976.186 kb on + strandat 976.196 kb on + strandat 976.199 kb on - strandat 976.199 kb on - strandat 976.201 kb on - strandat 976.206 kb on + strandat 976.220 kb on + strandat 976.228 kb on - strandat 976.229 kb on - strandat 976.239 kb on + strand, within HSERO_RS04425at 976.239 kb on + strand, within HSERO_RS04425at 976.264 kb on - strand, within HSERO_RS04425at 976.273 kb on + strand, within HSERO_RS04425at 976.281 kb on - strand, within HSERO_RS04425at 976.285 kb on + strand, within HSERO_RS04425at 976.292 kb on + strand, within HSERO_RS04425at 976.292 kb on + strand, within HSERO_RS04425at 976.292 kb on + strand, within HSERO_RS04425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.025 mg/ml
remove
974,118 + HSERO_RS04390 0.66 +0.6
974,341 - +3.3
974,527 + +0.3
974,551 + +0.2
974,627 + +0.5
974,635 - HSERO_RS04400 0.12 +0.3
974,708 + HSERO_RS04400 0.49 +1.6
974,708 + HSERO_RS04400 0.49 +1.5
974,708 + HSERO_RS04400 0.49 -0.0
974,716 - HSERO_RS04400 0.53 +0.3
974,736 - HSERO_RS04400 0.64 -0.4
974,747 + +0.4
974,755 - -1.0
974,813 + HSERO_RS04405 0.53 +1.9
974,821 - HSERO_RS04405 0.60 +0.5
974,861 + +0.4
974,908 - HSERO_RS04410 0.23 +1.7
974,940 - HSERO_RS04410 0.39 +0.1
975,014 + HSERO_RS04410 0.76 -0.8
975,014 + -0.7
975,022 - HSERO_RS04410 0.80 +1.8
975,022 - HSERO_RS04410 0.80 -1.5
975,035 + HSERO_RS04410 0.87 -0.5
975,035 + HSERO_RS04410 0.87 +0.1
975,045 + -2.5
975,125 - HSERO_RS04415 0.30 +0.4
975,146 - HSERO_RS04415 0.38 +0.5
975,153 + +1.9
975,153 + HSERO_RS04415 0.41 -0.9
975,153 + HSERO_RS04415 0.41 -0.3
975,161 - HSERO_RS04415 0.44 +0.2
975,161 - HSERO_RS04415 0.44 +0.2
975,161 - HSERO_RS04415 0.44 +0.8
975,161 - HSERO_RS04415 0.44 +1.0
975,163 + HSERO_RS04415 0.45 +0.9
975,163 + HSERO_RS04415 0.45 +0.5
975,171 - HSERO_RS04415 0.49 -1.3
975,171 - HSERO_RS04415 0.49 -1.2
975,171 - -1.0
975,171 - HSERO_RS04415 0.49 -0.8
975,173 - HSERO_RS04415 0.49 +0.3
975,173 - HSERO_RS04415 0.49 +0.9
975,173 - HSERO_RS04415 0.49 +0.3
975,183 + HSERO_RS04415 0.53 +0.2
975,301 + +0.3
975,310 - -0.6
975,310 - +0.2
975,335 - +0.3
975,352 - +1.7
975,396 + -0.1
975,396 + +0.3
975,404 - -0.1
975,404 - -0.4
976,066 + +0.3
976,082 + -0.9
976,089 + -1.0
976,089 + +0.3
976,089 - -0.2
976,091 + -0.5
976,094 - -1.0
976,094 - -0.7
976,094 - +0.2
976,097 - -1.3
976,099 - -0.4
976,099 - -1.7
976,127 + +1.7
976,127 + +0.8
976,136 - -1.2
976,141 + +0.0
976,141 - -1.0
976,141 - +1.5
976,147 + -0.6
976,147 + -1.0
976,147 + +0.3
976,147 + -0.5
976,147 + -0.8
976,147 + -0.1
976,147 + -3.4
976,147 + -1.4
976,147 + +0.5
976,147 + +0.7
976,147 + +0.3
976,147 + -0.1
976,147 + -0.3
976,149 + -0.0
976,155 - -0.9
976,155 - -4.4
976,155 - -1.9
976,155 - -0.3
976,155 - -0.2
976,155 - +0.3
976,155 - -0.0
976,155 - -0.2
976,155 - -0.1
976,155 - -0.5
976,155 - +0.1
976,155 - -0.5
976,168 - +0.5
976,168 - -0.2
976,186 + -1.3
976,196 + +1.5
976,199 - +0.2
976,199 - +1.3
976,201 - +0.9
976,206 + +0.4
976,220 + -0.1
976,228 - -0.4
976,229 - -0.2
976,239 + HSERO_RS04425 0.11 -1.1
976,239 + HSERO_RS04425 0.11 +0.0
976,264 - HSERO_RS04425 0.14 +0.5
976,273 + HSERO_RS04425 0.16 -2.3
976,281 - HSERO_RS04425 0.17 +0.8
976,285 + HSERO_RS04425 0.18 +0.4
976,292 + HSERO_RS04425 0.19 +0.1
976,292 + HSERO_RS04425 0.19 +1.1
976,292 + HSERO_RS04425 0.19 -0.5

Or see this region's nucleotide sequence