Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03630

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03625 and CA265_RS03630 are separated by 1 nucleotidesCA265_RS03630 and CA265_RS03635 are separated by 106 nucleotides CA265_RS03625: CA265_RS03625 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 865,999 to 867,132 _RS03625 CA265_RS03630: CA265_RS03630 - histidinol-phosphate transaminase, at 867,134 to 868,174 _RS03630 CA265_RS03635: CA265_RS03635 - histidinol dehydrogenase, at 868,281 to 869,561 _RS03635 Position (kb) 867 868 869Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 866.134 kb on + strand, within CA265_RS03625at 866.157 kb on + strand, within CA265_RS03625at 866.178 kb on - strand, within CA265_RS03625at 866.320 kb on + strand, within CA265_RS03625at 866.333 kb on - strand, within CA265_RS03625at 866.378 kb on - strand, within CA265_RS03625at 866.398 kb on - strand, within CA265_RS03625at 866.401 kb on + strand, within CA265_RS03625at 866.401 kb on + strand, within CA265_RS03625at 866.402 kb on - strand, within CA265_RS03625at 866.420 kb on - strand, within CA265_RS03625at 866.536 kb on - strand, within CA265_RS03625at 866.601 kb on + strand, within CA265_RS03625at 866.655 kb on + strand, within CA265_RS03625at 866.780 kb on + strand, within CA265_RS03625at 866.902 kb on - strand, within CA265_RS03625at 866.993 kb on + strand, within CA265_RS03625at 867.023 kb on + strandat 867.024 kb on - strandat 867.027 kb on - strandat 867.067 kb on + strandat 867.115 kb on - strandat 867.122 kb on - strandat 867.158 kb on + strandat 867.181 kb on + strandat 867.263 kb on - strand, within CA265_RS03630at 867.363 kb on - strand, within CA265_RS03630at 867.465 kb on + strand, within CA265_RS03630at 867.465 kb on + strand, within CA265_RS03630at 867.466 kb on - strand, within CA265_RS03630at 867.567 kb on - strand, within CA265_RS03630at 867.628 kb on + strand, within CA265_RS03630at 867.633 kb on + strand, within CA265_RS03630at 867.662 kb on - strand, within CA265_RS03630at 867.686 kb on - strand, within CA265_RS03630at 867.833 kb on + strand, within CA265_RS03630at 867.834 kb on - strand, within CA265_RS03630at 867.853 kb on - strand, within CA265_RS03630at 867.853 kb on - strand, within CA265_RS03630at 867.921 kb on - strand, within CA265_RS03630at 867.981 kb on - strand, within CA265_RS03630at 868.158 kb on - strandat 868.224 kb on - strandat 868.225 kb on + strandat 868.225 kb on + strandat 868.225 kb on + strandat 868.228 kb on - strandat 868.264 kb on + strandat 868.313 kb on + strandat 868.362 kb on + strandat 868.363 kb on - strandat 868.425 kb on - strand, within CA265_RS03635at 868.469 kb on + strand, within CA265_RS03635at 868.469 kb on + strand, within CA265_RS03635at 868.470 kb on - strand, within CA265_RS03635at 868.470 kb on - strand, within CA265_RS03635at 868.545 kb on - strand, within CA265_RS03635at 868.556 kb on + strand, within CA265_RS03635at 868.578 kb on - strand, within CA265_RS03635at 868.644 kb on + strand, within CA265_RS03635at 868.766 kb on + strand, within CA265_RS03635at 868.855 kb on - strand, within CA265_RS03635at 868.877 kb on + strand, within CA265_RS03635at 868.887 kb on + strand, within CA265_RS03635at 868.888 kb on - strand, within CA265_RS03635at 868.949 kb on + strand, within CA265_RS03635at 868.949 kb on + strand, within CA265_RS03635at 868.951 kb on + strand, within CA265_RS03635at 868.952 kb on - strand, within CA265_RS03635at 868.954 kb on - strandat 869.013 kb on + strand, within CA265_RS03635at 869.013 kb on + strand, within CA265_RS03635at 869.060 kb on - strand, within CA265_RS03635at 869.161 kb on - strand, within CA265_RS03635

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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866,134 + CA265_RS03625 0.12 -1.7
866,157 + CA265_RS03625 0.14 +0.0
866,178 - CA265_RS03625 0.16 -3.5
866,320 + CA265_RS03625 0.28 -2.2
866,333 - CA265_RS03625 0.29 -3.4
866,378 - CA265_RS03625 0.33 -3.1
866,398 - CA265_RS03625 0.35 -2.7
866,401 + CA265_RS03625 0.35 -2.6
866,401 + CA265_RS03625 0.35 -2.7
866,402 - CA265_RS03625 0.36 -1.2
866,420 - CA265_RS03625 0.37 -2.1
866,536 - CA265_RS03625 0.47 -2.9
866,601 + CA265_RS03625 0.53 -3.7
866,655 + CA265_RS03625 0.58 -3.2
866,780 + CA265_RS03625 0.69 -3.6
866,902 - CA265_RS03625 0.80 -3.9
866,993 + CA265_RS03625 0.88 -4.0
867,023 + -2.6
867,024 - -3.4
867,027 - -1.6
867,067 + -1.3
867,115 - -2.4
867,122 - -3.1
867,158 + -4.1
867,181 + -2.7
867,263 - CA265_RS03630 0.12 -3.4
867,363 - CA265_RS03630 0.22 -3.9
867,465 + CA265_RS03630 0.32 -2.9
867,465 + CA265_RS03630 0.32 -4.3
867,466 - CA265_RS03630 0.32 -2.6
867,567 - CA265_RS03630 0.42 -3.4
867,628 + CA265_RS03630 0.47 -3.6
867,633 + CA265_RS03630 0.48 -2.7
867,662 - CA265_RS03630 0.51 -5.5
867,686 - CA265_RS03630 0.53 -2.4
867,833 + CA265_RS03630 0.67 -0.8
867,834 - CA265_RS03630 0.67 -2.6
867,853 - CA265_RS03630 0.69 -2.0
867,853 - CA265_RS03630 0.69 -2.4
867,921 - CA265_RS03630 0.76 -2.8
867,981 - CA265_RS03630 0.81 -4.4
868,158 - -5.4
868,224 - +0.7
868,225 + -0.1
868,225 + -0.0
868,225 + -0.4
868,228 - +0.5
868,264 + -0.4
868,313 + -3.1
868,362 + -2.5
868,363 - -3.7
868,425 - CA265_RS03635 0.11 -4.1
868,469 + CA265_RS03635 0.15 -4.0
868,469 + CA265_RS03635 0.15 -4.6
868,470 - CA265_RS03635 0.15 -1.4
868,470 - CA265_RS03635 0.15 -5.5
868,545 - CA265_RS03635 0.21 -2.0
868,556 + CA265_RS03635 0.21 -3.3
868,578 - CA265_RS03635 0.23 -3.4
868,644 + CA265_RS03635 0.28 -4.3
868,766 + CA265_RS03635 0.38 -2.4
868,855 - CA265_RS03635 0.45 -2.0
868,877 + CA265_RS03635 0.47 -0.7
868,887 + CA265_RS03635 0.47 -2.9
868,888 - CA265_RS03635 0.47 -2.0
868,949 + CA265_RS03635 0.52 -3.2
868,949 + CA265_RS03635 0.52 -3.3
868,951 + CA265_RS03635 0.52 -2.7
868,952 - CA265_RS03635 0.52 -3.3
868,954 - -0.4
869,013 + CA265_RS03635 0.57 -3.2
869,013 + CA265_RS03635 0.57 -1.9
869,060 - CA265_RS03635 0.61 -2.3
869,161 - CA265_RS03635 0.69 -2.5

Or see this region's nucleotide sequence