Experiment: L-Lysine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01950 and CA265_RS01955 overlap by 14 nucleotides CA265_RS01955 and CA265_RS01960 are separated by 459 nucleotides CA265_RS01960 and CA265_RS01965 overlap by 11 nucleotides CA265_RS01965 and CA265_RS01970 overlap by 4 nucleotides
CA265_RS01950: CA265_RS01950 - hypothetical protein, at 496,322 to 496,552
_RS01950
CA265_RS01955: CA265_RS01955 - VapC toxin family PIN domain ribonuclease, at 496,539 to 496,930
_RS01955
CA265_RS01960: CA265_RS01960 - division/cell wall cluster transcriptional repressor MraZ, at 497,390 to 497,857
_RS01960
CA265_RS01965: CA265_RS01965 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 497,847 to 498,752
_RS01965
CA265_RS01970: CA265_RS01970 - hypothetical protein, at 498,749 to 499,171
_RS01970
Position (kb) 497
498 Strain fitness (log2 ratio) -1
0
1
2 at 496.408 kb on - strand, within CA265_RS01950 at 496.477 kb on + strand, within CA265_RS01950 at 496.504 kb on + strand, within CA265_RS01950 at 496.504 kb on + strand, within CA265_RS01950 at 496.504 kb on + strand, within CA265_RS01950 at 496.550 kb on + strand at 496.558 kb on + strand at 496.558 kb on + strand at 496.559 kb on - strand at 496.565 kb on + strand at 496.565 kb on + strand at 496.568 kb on + strand at 496.568 kb on + strand at 496.569 kb on - strand at 496.569 kb on - strand at 496.569 kb on - strand at 496.569 kb on - strand at 496.583 kb on - strand, within CA265_RS01955 at 496.668 kb on - strand, within CA265_RS01955 at 496.668 kb on - strand, within CA265_RS01955 at 496.738 kb on + strand, within CA265_RS01955 at 496.831 kb on + strand, within CA265_RS01955 at 496.848 kb on + strand, within CA265_RS01955 at 496.849 kb on - strand, within CA265_RS01955 at 496.913 kb on - strand at 497.138 kb on - strand at 497.156 kb on - strand at 497.167 kb on - strand at 497.220 kb on + strand at 497.221 kb on - strand at 497.263 kb on + strand at 497.263 kb on + strand at 497.274 kb on + strand at 497.289 kb on - strand at 497.500 kb on + strand, within CA265_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (N) remove 496,408 - CA265_RS01950 0.37 +1.0 496,477 + CA265_RS01950 0.67 +0.6 496,504 + CA265_RS01950 0.79 +0.2 496,504 + CA265_RS01950 0.79 +0.6 496,504 + CA265_RS01950 0.79 +0.4 496,550 + +0.2 496,558 + -0.7 496,558 + +0.2 496,559 - +0.1 496,565 + -0.1 496,565 + -0.2 496,568 + +0.4 496,568 + -0.1 496,569 - +0.1 496,569 - +0.2 496,569 - +0.5 496,569 - +0.0 496,583 - CA265_RS01955 0.11 -0.1 496,668 - CA265_RS01955 0.33 +0.3 496,668 - CA265_RS01955 0.33 -0.3 496,738 + CA265_RS01955 0.51 -0.1 496,831 + CA265_RS01955 0.74 -0.3 496,848 + CA265_RS01955 0.79 +0.4 496,849 - CA265_RS01955 0.79 +0.5 496,913 - +1.8 497,138 - +0.4 497,156 - +0.4 497,167 - -0.0 497,220 + -1.5 497,221 - -0.2 497,263 + -1.1 497,263 + +0.4 497,274 + +0.5 497,289 - -0.1 497,500 + CA265_RS01960 0.24 -0.8
Or see this region's nucleotide sequence