Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16705

Experiment: L-Arginine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS16700 and BPHYT_RS16705 are separated by 285 nucleotidesBPHYT_RS16705 and BPHYT_RS16710 are separated by 139 nucleotides BPHYT_RS16700: BPHYT_RS16700 - ABC transporter, at 3,780,039 to 3,780,932 _RS16700 BPHYT_RS16705: BPHYT_RS16705 - glutamate dehydrogenase, at 3,781,218 to 3,782,531 _RS16705 BPHYT_RS16710: BPHYT_RS16710 - LysR family transcriptional regulator, at 3,782,671 to 3,783,627 _RS16710 Position (kb) 3781 3782 3783Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3780.781 kb on + strand, within BPHYT_RS16700at 3780.781 kb on + strand, within BPHYT_RS16700at 3780.782 kb on - strand, within BPHYT_RS16700at 3780.785 kb on - strand, within BPHYT_RS16700at 3780.855 kb on - strandat 3780.967 kb on - strandat 3780.974 kb on + strandat 3780.978 kb on + strandat 3780.989 kb on + strandat 3780.989 kb on + strandat 3780.989 kb on + strandat 3780.989 kb on + strandat 3780.989 kb on + strandat 3780.990 kb on - strandat 3780.995 kb on + strandat 3780.995 kb on + strandat 3780.995 kb on + strandat 3780.996 kb on - strandat 3780.997 kb on + strandat 3780.997 kb on + strandat 3780.997 kb on + strandat 3780.997 kb on + strandat 3780.997 kb on + strandat 3780.998 kb on - strandat 3781.069 kb on - strandat 3781.205 kb on - strandat 3782.964 kb on - strand, within BPHYT_RS16710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
remove
3,780,781 + BPHYT_RS16700 0.83 +0.5
3,780,781 + BPHYT_RS16700 0.83 +0.7
3,780,782 - BPHYT_RS16700 0.83 +0.5
3,780,785 - BPHYT_RS16700 0.83 +0.4
3,780,855 - +0.3
3,780,967 - +0.0
3,780,974 + +0.5
3,780,978 + -0.0
3,780,989 + +0.3
3,780,989 + +0.4
3,780,989 + +0.3
3,780,989 + +0.2
3,780,989 + +0.0
3,780,990 - +0.1
3,780,995 + +0.4
3,780,995 + +0.8
3,780,995 + +0.4
3,780,996 - -0.4
3,780,997 + -0.2
3,780,997 + -0.6
3,780,997 + +0.3
3,780,997 + +0.4
3,780,997 + +0.3
3,780,998 - +0.8
3,781,069 - -0.3
3,781,205 - +1.0
3,782,964 - BPHYT_RS16710 0.31 -5.2

Or see this region's nucleotide sequence