Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05995 and BPHYT_RS06000 are separated by 61 nucleotides BPHYT_RS06000 and BPHYT_RS06005 are separated by 238 nucleotides BPHYT_RS06005 and BPHYT_RS06010 overlap by 1 nucleotides BPHYT_RS06010 and BPHYT_RS06015 overlap by 4 nucleotides
BPHYT_RS05995: BPHYT_RS05995 - hypothetical protein, at 1,365,384 to 1,367,198
_RS05995
BPHYT_RS06000: BPHYT_RS06000 - flagellar motor protein MotB, at 1,367,260 to 1,367,766
_RS06000
BPHYT_RS06005: BPHYT_RS06005 - chorismate--pyruvate lyase, at 1,368,005 to 1,368,688
_RS06005
BPHYT_RS06010: BPHYT_RS06010 - 2-hydroxyacid dehydrogenase, at 1,368,688 to 1,369,161
_RS06010
BPHYT_RS06015: BPHYT_RS06015 - spermidine synthase, at 1,369,158 to 1,370,090
_RS06015
Position (kb) 1368
1369 Strain fitness (log2 ratio) -1
0
1 at 1367.147 kb on + strand at 1367.148 kb on - strand at 1367.152 kb on + strand at 1367.153 kb on - strand at 1367.261 kb on + strand at 1367.261 kb on + strand at 1367.280 kb on + strand at 1367.280 kb on + strand at 1367.343 kb on + strand, within BPHYT_RS06000 at 1367.369 kb on + strand, within BPHYT_RS06000 at 1367.392 kb on - strand, within BPHYT_RS06000 at 1367.468 kb on + strand, within BPHYT_RS06000 at 1367.469 kb on - strand, within BPHYT_RS06000 at 1367.495 kb on + strand, within BPHYT_RS06000 at 1367.880 kb on + strand at 1367.993 kb on + strand at 1367.993 kb on + strand at 1367.994 kb on - strand at 1368.275 kb on - strand, within BPHYT_RS06005 at 1368.275 kb on - strand, within BPHYT_RS06005 at 1368.357 kb on - strand, within BPHYT_RS06005 at 1368.357 kb on - strand, within BPHYT_RS06005 at 1368.358 kb on + strand, within BPHYT_RS06005 at 1368.364 kb on + strand, within BPHYT_RS06005 at 1368.729 kb on + strand at 1368.781 kb on + strand, within BPHYT_RS06010 at 1368.782 kb on - strand, within BPHYT_RS06010 at 1368.782 kb on - strand, within BPHYT_RS06010 at 1368.784 kb on + strand, within BPHYT_RS06010 at 1368.784 kb on + strand, within BPHYT_RS06010 at 1368.785 kb on - strand, within BPHYT_RS06010 at 1369.083 kb on - strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.156 kb on - strand at 1369.156 kb on - strand at 1369.156 kb on - strand at 1369.247 kb on + strand at 1369.248 kb on - strand at 1369.484 kb on + strand, within BPHYT_RS06015
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 1,367,147 + +0.4 1,367,148 - +0.8 1,367,152 + +0.4 1,367,153 - +0.1 1,367,261 + +0.6 1,367,261 + +0.4 1,367,280 + +0.2 1,367,280 + -1.0 1,367,343 + BPHYT_RS06000 0.16 +0.1 1,367,369 + BPHYT_RS06000 0.21 -0.4 1,367,392 - BPHYT_RS06000 0.26 +1.3 1,367,468 + BPHYT_RS06000 0.41 +0.1 1,367,469 - BPHYT_RS06000 0.41 +0.6 1,367,495 + BPHYT_RS06000 0.46 +0.0 1,367,880 + -0.2 1,367,993 + +0.5 1,367,993 + +0.4 1,367,994 - -0.5 1,368,275 - BPHYT_RS06005 0.39 -1.1 1,368,275 - BPHYT_RS06005 0.39 -1.0 1,368,357 - BPHYT_RS06005 0.51 +0.4 1,368,357 - BPHYT_RS06005 0.51 +0.2 1,368,358 + BPHYT_RS06005 0.52 -1.7 1,368,364 + BPHYT_RS06005 0.52 -0.7 1,368,729 + +0.1 1,368,781 + BPHYT_RS06010 0.20 +0.5 1,368,782 - BPHYT_RS06010 0.20 -0.9 1,368,782 - BPHYT_RS06010 0.20 +0.2 1,368,784 + BPHYT_RS06010 0.20 -0.1 1,368,784 + BPHYT_RS06010 0.20 +0.8 1,368,785 - BPHYT_RS06010 0.20 -0.1 1,369,083 - BPHYT_RS06010 0.83 +0.8 1,369,110 + BPHYT_RS06010 0.89 -0.1 1,369,110 + BPHYT_RS06010 0.89 -0.2 1,369,110 + BPHYT_RS06010 0.89 -0.5 1,369,110 + BPHYT_RS06010 0.89 +0.1 1,369,111 - BPHYT_RS06010 0.89 +1.3 1,369,111 - BPHYT_RS06010 0.89 +0.1 1,369,111 - BPHYT_RS06010 0.89 -0.2 1,369,155 + -0.2 1,369,155 + +0.2 1,369,155 + +0.1 1,369,155 + +0.8 1,369,155 + -0.1 1,369,156 - -0.7 1,369,156 - +1.2 1,369,156 - +0.8 1,369,247 + -1.0 1,369,248 - -0.0 1,369,484 + BPHYT_RS06015 0.35 +0.9
Or see this region's nucleotide sequence