Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00910 and BPHYT_RS00915 are separated by 140 nucleotides BPHYT_RS00915 and BPHYT_RS00920 are separated by 559 nucleotides
BPHYT_RS00910: BPHYT_RS00910 - amidohydrolase, at 208,765 to 209,625
_RS00910
BPHYT_RS00915: BPHYT_RS00915 - IclR family transcriptional regulator, at 209,766 to 210,644
_RS00915
BPHYT_RS00920: BPHYT_RS00920 - transposase, at 211,204 to 212,040
_RS00920
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.873 kb on - strand, within BPHYT_RS00910 at 208.895 kb on - strand, within BPHYT_RS00910 at 209.081 kb on + strand, within BPHYT_RS00910 at 209.081 kb on + strand, within BPHYT_RS00910 at 209.082 kb on - strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.310 kb on + strand, within BPHYT_RS00910 at 209.323 kb on + strand, within BPHYT_RS00910 at 209.324 kb on - strand, within BPHYT_RS00910 at 209.397 kb on - strand, within BPHYT_RS00910 at 209.591 kb on + strand at 209.592 kb on - strand at 209.703 kb on + strand at 209.713 kb on + strand at 209.713 kb on + strand at 209.713 kb on + strand at 209.717 kb on + strand at 209.730 kb on - strand at 209.853 kb on + strand at 209.853 kb on + strand at 209.853 kb on + strand at 209.854 kb on - strand, within BPHYT_RS00915 at 209.854 kb on - strand, within BPHYT_RS00915 at 209.854 kb on - strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.964 kb on + strand, within BPHYT_RS00915 at 209.965 kb on - strand, within BPHYT_RS00915 at 209.965 kb on - strand, within BPHYT_RS00915 at 209.989 kb on - strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.167 kb on + strand, within BPHYT_RS00915 at 210.273 kb on + strand, within BPHYT_RS00915 at 210.473 kb on + strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.474 kb on - strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.477 kb on + strand, within BPHYT_RS00915 at 210.478 kb on - strand, within BPHYT_RS00915 at 210.920 kb on + strand at 211.197 kb on - strand at 211.205 kb on + strand at 211.205 kb on + strand at 211.206 kb on - strand at 211.464 kb on - strand, within BPHYT_RS00920 at 211.521 kb on - strand, within BPHYT_RS00920 at 211.550 kb on + strand, within BPHYT_RS00920 at 211.551 kb on - strand, within BPHYT_RS00920
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 208,873 - BPHYT_RS00910 0.13 +0.8 208,895 - BPHYT_RS00910 0.15 -0.5 209,081 + BPHYT_RS00910 0.37 +0.5 209,081 + BPHYT_RS00910 0.37 -0.4 209,082 - BPHYT_RS00910 0.37 -1.5 209,310 + BPHYT_RS00910 0.63 +2.5 209,310 + BPHYT_RS00910 0.63 -1.0 209,310 + BPHYT_RS00910 0.63 +0.3 209,323 + BPHYT_RS00910 0.65 -0.1 209,324 - BPHYT_RS00910 0.65 -0.9 209,397 - BPHYT_RS00910 0.73 -0.3 209,591 + -2.2 209,592 - +0.2 209,703 + -0.4 209,713 + -0.5 209,713 + +0.8 209,713 + +0.3 209,717 + +0.4 209,730 - -1.1 209,853 + -0.5 209,853 + -1.8 209,853 + -1.2 209,854 - BPHYT_RS00915 0.10 -0.6 209,854 - BPHYT_RS00915 0.10 -3.2 209,854 - BPHYT_RS00915 0.10 -1.2 209,964 + BPHYT_RS00915 0.23 -1.5 209,964 + BPHYT_RS00915 0.23 -2.5 209,964 + BPHYT_RS00915 0.23 -1.4 209,964 + BPHYT_RS00915 0.23 -1.9 209,965 - BPHYT_RS00915 0.23 -0.7 209,965 - BPHYT_RS00915 0.23 -0.5 209,989 - BPHYT_RS00915 0.25 -2.2 210,167 + BPHYT_RS00915 0.46 -2.6 210,167 + BPHYT_RS00915 0.46 -1.2 210,167 + BPHYT_RS00915 0.46 -2.2 210,273 + BPHYT_RS00915 0.58 -2.1 210,473 + BPHYT_RS00915 0.80 -2.3 210,474 - BPHYT_RS00915 0.81 -0.5 210,474 - BPHYT_RS00915 0.81 -1.7 210,474 - BPHYT_RS00915 0.81 -1.8 210,474 - BPHYT_RS00915 0.81 -1.1 210,474 - BPHYT_RS00915 0.81 -0.6 210,477 + BPHYT_RS00915 0.81 -1.1 210,477 + BPHYT_RS00915 0.81 -2.4 210,478 - BPHYT_RS00915 0.81 -4.4 210,920 + +0.0 211,197 - +0.0 211,205 + -1.1 211,205 + +0.9 211,206 - +0.2 211,464 - BPHYT_RS00920 0.31 +0.2 211,521 - BPHYT_RS00920 0.38 +0.3 211,550 + BPHYT_RS00920 0.41 -0.5 211,551 - BPHYT_RS00920 0.41 +0.3
Or see this region's nucleotide sequence