Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19240

Experiment: CDM1 without Thiamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Thiamine
2,093,041	-		BBR_RS19235	0.37	-0.9
2,093,052	+		BBR_RS19235	0.38	+0.2
2,093,052	+		BBR_RS19235	0.38	+0.7
2,093,057	+		BBR_RS19235	0.38	-0.1
2,093,057	+		BBR_RS19235	0.38	+0.2
2,093,060	-		BBR_RS19235	0.39	-0.8
2,093,089	+		BBR_RS19235	0.41	+0.5
2,093,100	+		BBR_RS19235	0.42	+1.0
2,093,102	-		BBR_RS19235	0.42	+0.4
2,093,105	-		BBR_RS19235	0.42	+0.1
2,093,120	+		BBR_RS19235	0.44	-0.4
2,093,128	-		BBR_RS19235	0.44	-0.2
2,093,130	+		BBR_RS19235	0.44	-0.2
2,093,130	-		BBR_RS19235	0.44	-0.2
2,093,148	+		BBR_RS19235	0.46	-0.8
2,093,152	-		BBR_RS19235	0.46	+0.1
2,093,167	-		BBR_RS19235	0.47	-0.3
2,093,191	-		BBR_RS19235	0.49	-0.2
2,093,202	+		BBR_RS19235	0.50	-2.3
2,093,202	+		BBR_RS19235	0.50	-0.0
2,093,204	+		BBR_RS19235	0.50	-1.3
2,093,214	-		BBR_RS19235	0.51	+0.8
2,093,215	+		BBR_RS19235	0.51	-0.9
2,093,222	+		BBR_RS19235	0.52	-0.1
2,093,250	+		BBR_RS19235	0.54	-0.5
2,093,257	-		BBR_RS19235	0.55	-1.9
2,093,282	+		BBR_RS19235	0.57	+0.5
2,093,292	+		BBR_RS19235	0.58	-0.0
2,093,292	+		BBR_RS19235	0.58	-0.9
2,093,294	+		BBR_RS19235	0.58	+0.1
2,093,300	-		BBR_RS19235	0.58	+0.6
2,093,300	-		BBR_RS19235	0.58	+0.0
2,093,300	-		BBR_RS19235	0.58	-0.6
2,093,307	+		BBR_RS19235	0.59	-1.0
2,093,310	-		BBR_RS19235	0.59	-0.1
2,093,332	+		BBR_RS19235	0.61	-1.2
2,093,345	-		BBR_RS19235	0.62	-0.8
2,093,345	-		BBR_RS19235	0.62	-1.1
2,093,346	+		BBR_RS19235	0.62	-0.4
2,093,354	-		BBR_RS19235	0.63	-1.0
2,093,366	+		BBR_RS19235	0.64	-0.6
2,093,366	+		BBR_RS19235	0.64	-0.1
2,093,368	+		BBR_RS19235	0.64	+1.6
2,093,375	+		BBR_RS19235	0.65	+0.2
2,093,402	+		BBR_RS19235	0.67	+0.0
2,093,408	+		BBR_RS19235	0.67	-0.8
2,093,409	-		BBR_RS19235	0.67	-1.8
2,093,409	-		BBR_RS19235	0.67	-0.6
2,093,411	-		BBR_RS19235	0.67	-0.7
2,093,411	-		BBR_RS19235	0.67	-0.0
2,093,416	-		BBR_RS19235	0.68	-2.1
2,093,427	-		BBR_RS19235	0.69	-2.5
2,093,432	-		BBR_RS19235	0.69	-0.1
2,093,445	+		BBR_RS19235	0.70	+0.8
2,093,472	-		BBR_RS19235	0.72	-0.4
2,093,500	+		BBR_RS19235	0.75	-0.5
2,093,500	+		BBR_RS19235	0.75	+0.6
2,093,500	+		BBR_RS19235	0.75	-0.1
2,093,500	+		BBR_RS19235	0.75	+0.0
2,093,500	+		BBR_RS19235	0.75	-0.9
2,093,500	+		BBR_RS19235	0.75	+0.7
2,093,500	+		BBR_RS19235	0.75	+0.3
2,093,500	+		BBR_RS19235	0.75	-0.3
2,093,500	+		BBR_RS19235	0.75	-0.7
2,093,508	-		BBR_RS19235	0.75	-0.7
2,093,508	-		BBR_RS19235	0.75	+0.2
2,093,508	-		BBR_RS19235	0.75	-0.5
2,093,508	-		BBR_RS19235	0.75	-0.5
2,093,508	-		BBR_RS19235	0.75	-0.2
2,093,508	-		BBR_RS19235	0.75	-1.0
2,093,508	-		BBR_RS19235	0.75	-1.5
2,093,514	+		BBR_RS19235	0.76	+0.9
2,093,522	-		BBR_RS19235	0.77	-2.4
2,093,522	-		BBR_RS19235	0.77	-0.3
2,093,523	+		BBR_RS19235	0.77	+0.3
2,093,523	+		BBR_RS19235	0.77	+0.3
2,093,548	+		BBR_RS19235	0.79	-0.5
2,093,548	-		BBR_RS19235	0.79	-0.4
2,093,552	+		BBR_RS19235	0.79	-0.3
2,093,553	-		BBR_RS19235	0.79	-0.6
2,093,553	-		BBR_RS19235	0.79	-0.6
2,093,593	+		BBR_RS19235	0.82	-0.7
2,093,594	+		BBR_RS19235	0.83	+0.1
2,093,600	+		BBR_RS19235	0.83	-0.8
2,093,601	+		BBR_RS19235	0.83	-0.5
2,093,601	+		BBR_RS19235	0.83	+0.6
2,093,606	+		BBR_RS19235	0.83	+0.1
2,093,629	+		BBR_RS19235	0.85	+0.7
2,093,650	+		BBR_RS19235	0.87	-0.4
2,093,672	+		BBR_RS19235	0.89	+0.0
2,093,672	+		BBR_RS19235	0.89	+0.8
2,093,687	-				+1.2
2,093,697	-				-0.6
2,093,697	-				-0.3
2,093,697	-				-0.5
2,093,708	+				-0.3
2,093,731	+				-1.4
2,093,759	+				-1.6
2,093,767	-				-0.9
2,093,776	-				+0.4
2,093,856	+				-0.2
2,093,868	+				-1.0
2,093,868	+				-1.9
2,093,868	+				-2.8
2,093,875	+				-1.5
2,093,875	+				-0.6
2,093,875	+				-1.8
2,093,876	+				-1.7
2,093,876	-				-2.0
2,093,876	-				-2.2
2,093,876	-				-1.3
2,093,883	-				-2.8
2,093,884	-				-1.0
2,093,914	+				-0.2
2,093,924	-				-3.0
2,093,924	-				-2.0
2,093,976	-				-3.4
2,093,976	-				-2.9
2,093,998	+				+0.0
2,094,006	-				-3.9
2,094,006	-				-4.4
2,094,021	+				-0.7
2,094,053	+				-2.7
2,094,053	+				-2.8
2,094,053	+				-5.1
2,094,082	+				-4.9
2,094,110	+				-4.1
2,094,115	-				-2.7
2,094,118	-				-1.8
2,094,120	-				-4.1
2,094,120	-				-5.2
2,094,120	-				-4.6
2,094,122	+				-1.9
2,094,125	-				-4.9
2,094,133	+		BBR_RS19240	0.11	-3.3
2,094,170	+		BBR_RS19240	0.14	-4.6
2,094,191	+		BBR_RS19240	0.16	-5.6
2,094,191	+		BBR_RS19240	0.16	-4.7
2,094,191	+		BBR_RS19240	0.16	-2.9
2,094,191	+		BBR_RS19240	0.16	-4.4
2,094,191	+		BBR_RS19240	0.16	-4.3
2,094,191	+		BBR_RS19240	0.16	-3.2
2,094,199	-		BBR_RS19240	0.17	-5.0
2,094,199	-		BBR_RS19240	0.17	-5.1
2,094,199	-		BBR_RS19240	0.17	-4.9
2,094,206	-		BBR_RS19240	0.18	-3.6
2,094,228	-		BBR_RS19240	0.20	-4.7
2,094,238	+		BBR_RS19240	0.21	-5.0
2,094,295	-		BBR_RS19240	0.26	-4.2
2,094,310	+		BBR_RS19240	0.28	-4.3
2,094,314	-		BBR_RS19240	0.28	-4.5
2,094,338	+		BBR_RS19240	0.31	-3.5
2,094,359	-		BBR_RS19240	0.33	-3.6
2,094,388	-		BBR_RS19240	0.36	-3.5
2,094,413	+		BBR_RS19240	0.38	-4.4
2,094,421	-		BBR_RS19240	0.39	-4.3
2,094,421	-		BBR_RS19240	0.39	-3.8
2,094,458	+		BBR_RS19240	0.42	-5.1
2,094,463	-		BBR_RS19240	0.43	-5.1
2,094,467	-		BBR_RS19240	0.43	-5.3
2,094,475	-		BBR_RS19240	0.44	-3.9
2,094,476	-		BBR_RS19240	0.44	-2.4
2,094,507	+		BBR_RS19240	0.47	-2.6
2,094,510	+		BBR_RS19240	0.48	-2.0
2,094,521	+		BBR_RS19240	0.49	-3.9
2,094,532	+		BBR_RS19240	0.50	-4.2
2,094,547	+		BBR_RS19240	0.51	-2.3
2,094,547	+		BBR_RS19240	0.51	-1.4
2,094,555	-		BBR_RS19240	0.52	-3.9
2,094,586	+		BBR_RS19240	0.55	-4.7
2,094,633	-		BBR_RS19240	0.60	-3.4
2,094,639	+		BBR_RS19240	0.60	-3.3
2,094,667	+		BBR_RS19240	0.63	-3.2
2,094,668	+		BBR_RS19240	0.63	-4.2
2,094,675	-		BBR_RS19240	0.64	-3.2
2,094,693	+		BBR_RS19240	0.66	-4.3
2,094,693	+		BBR_RS19240	0.66	-4.0
2,094,698	+		BBR_RS19240	0.66	-5.1
2,094,698	+		BBR_RS19240	0.66	-4.2
2,094,698	+		BBR_RS19240	0.66	-4.0
2,094,701	-		BBR_RS19240	0.66	-3.3
2,094,701	-		BBR_RS19240	0.66	-4.3
2,094,701	-		BBR_RS19240	0.66	-4.8
2,094,706	-		BBR_RS19240	0.67	-2.6
2,094,706	-		BBR_RS19240	0.67	-4.1
2,094,706	-		BBR_RS19240	0.67	-6.4
2,094,709	-		BBR_RS19240	0.67	-3.3
2,094,709	-		BBR_RS19240	0.67	-3.5
2,094,711	-		BBR_RS19240	0.67	-4.3
2,094,715	+		BBR_RS19240	0.68	-2.5
2,094,751	-		BBR_RS19240	0.71	-3.9
2,094,757	-		BBR_RS19240	0.72	-4.4
2,094,759	-		BBR_RS19240	0.72	+0.6
2,094,759	-		BBR_RS19240	0.72	-5.0
2,094,759	-		BBR_RS19240	0.72	-4.7
2,094,789	+		BBR_RS19240	0.75	-2.4
2,094,830	-		BBR_RS19240	0.79	-3.7
2,094,845	+		BBR_RS19240	0.81	-3.5
2,094,845	-		BBR_RS19240	0.81	-3.3
2,094,845	-		BBR_RS19240	0.81	-2.8
2,094,853	-		BBR_RS19240	0.81	-2.1
2,094,853	-		BBR_RS19240	0.81	-3.1
2,094,853	-		BBR_RS19240	0.81	-2.8
2,094,878	-		BBR_RS19240	0.84	-3.9
2,094,910	+		BBR_RS19240	0.87	-0.1
2,094,910	+		BBR_RS19240	0.87	-2.8
2,094,910	+		BBR_RS19240	0.87	-2.4
2,094,916	-		BBR_RS19240	0.88	-4.4
2,094,918	-		BBR_RS19240	0.88	-4.3
2,094,951	-				-2.7
2,094,970	+				-5.2
2,094,978	-				-4.1
2,094,997	-				-4.9
2,095,001	-				-5.0
2,095,017	+				-4.6
2,095,020	-				-3.0
2,095,020	-				-3.6
2,095,043	+				-0.4
2,095,048	+				-1.6
2,095,048	+				-1.4
2,095,051	-				-0.6
2,095,056	-				+0.0
2,095,056	-				-0.0
2,095,056	-				+0.5
2,095,061	+				+0.7
2,095,069	-				-1.5
2,095,073	+				+0.7
2,095,076	-				-0.1
2,095,079	-				+0.3
2,095,081	-				-1.1
2,095,081	-				-0.5
2,095,086	-				+0.1
2,095,088	+				-0.4
2,095,095	+				-1.5
2,095,103	-				-1.3
2,095,131	-				+0.0
2,095,137	-				+0.8
2,095,171	+				-0.1
2,095,182	-				+0.0
2,095,183	-				+0.7
2,095,194	+				+0.7
2,095,202	-				+0.0
2,095,202	-				-0.3
2,095,202	-				+0.7
2,095,231	-		BBR_RS19245	0.11	-0.3
2,095,243	-		BBR_RS19245	0.13	+0.3
2,095,245	+		BBR_RS19245	0.13	-0.1
2,095,253	-		BBR_RS19245	0.14	-1.1
2,095,253	-		BBR_RS19245	0.14	-1.8
2,095,273	-		BBR_RS19245	0.18	+1.5
2,095,275	+		BBR_RS19245	0.18	+0.4
2,095,275	+		BBR_RS19245	0.18	+0.5
2,095,275	+		BBR_RS19245	0.18	-0.5
2,095,275	+		BBR_RS19245	0.18	+0.6
2,095,275	+		BBR_RS19245	0.18	-0.3
2,095,275	+		BBR_RS19245	0.18	+0.3
2,095,282	+		BBR_RS19245	0.19	-0.6
2,095,283	+		BBR_RS19245	0.20	+0.7
2,095,283	+		BBR_RS19245	0.20	+0.6
2,095,283	-		BBR_RS19245	0.20	-0.5
2,095,283	-		BBR_RS19245	0.20	-0.4
2,095,283	-		BBR_RS19245	0.20	-0.5
2,095,283	-		BBR_RS19245	0.20	+0.2
2,095,283	-		BBR_RS19245	0.20	-0.9
2,095,283	-		BBR_RS19245	0.20	-1.5
2,095,283	-		BBR_RS19245	0.20	+0.2
2,095,285	+		BBR_RS19245	0.20	-1.1
2,095,291	-		BBR_RS19245	0.21	+0.4
2,095,291	-		BBR_RS19245	0.21	-0.7
2,095,291	-		BBR_RS19245	0.21	-3.3
2,095,291	-		BBR_RS19245	0.21	-0.0
2,095,293	-		BBR_RS19245	0.21	-0.9
2,095,293	-		BBR_RS19245	0.21	-1.4
2,095,299	-		BBR_RS19245	0.22	-1.0
2,095,299	-		BBR_RS19245	0.22	-0.7
2,095,309	+		BBR_RS19245	0.24	+0.9
2,095,333	+		BBR_RS19245	0.28	+0.3
2,095,349	+		BBR_RS19245	0.31	-0.1
2,095,349	+		BBR_RS19245	0.31	-0.3
2,095,357	-		BBR_RS19245	0.32	+0.7
2,095,357	-		BBR_RS19245	0.32	-0.7
2,095,387	-		BBR_RS19245	0.37	-0.5
2,095,390	-		BBR_RS19245	0.38	+1.1
2,095,406	+		BBR_RS19245	0.40	-0.4
2,095,406	+		BBR_RS19245	0.40	+0.5
2,095,406	+		BBR_RS19245	0.40	+1.2
2,095,424	+		BBR_RS19245	0.44	+0.3
2,095,432	-		BBR_RS19245	0.45	-1.0
2,095,432	-		BBR_RS19245	0.45	-0.8
2,095,437	-		BBR_RS19245	0.46	-1.5
2,095,442	-		BBR_RS19245	0.47	-0.7
2,095,456	+		BBR_RS19245	0.49	-0.4
2,095,462	+		BBR_RS19245	0.50	+1.1
2,095,469	+		BBR_RS19245	0.51	+0.3
2,095,469	+		BBR_RS19245	0.51	-0.0
2,095,469	+		BBR_RS19245	0.51	+0.1
2,095,477	-		BBR_RS19245	0.53	-1.1
2,095,477	-		BBR_RS19245	0.53	-0.2
2,095,477	-		BBR_RS19245	0.53	+1.1
2,095,477	-		BBR_RS19245	0.53	-0.5
2,095,477	-		BBR_RS19245	0.53	-0.3
2,095,477	-		BBR_RS19245	0.53	-0.6
2,095,507	+		BBR_RS19245	0.58	-0.0
2,095,511	-		BBR_RS19245	0.58	-0.0
2,095,540	-		BBR_RS19245	0.63	-0.2
2,095,540	-		BBR_RS19245	0.63	-0.9
2,095,542	+		BBR_RS19245	0.64	+0.1
2,095,552	-		BBR_RS19245	0.65	-1.0
2,095,597	+		BBR_RS19245	0.73	+0.2
2,095,622	+		BBR_RS19245	0.77	-0.6
2,095,630	-		BBR_RS19245	0.79	-1.9
2,095,661	+		BBR_RS19245	0.84	-0.4
2,095,668	-		BBR_RS19245	0.85	-0.5
2,095,668	-		BBR_RS19245	0.85	+0.2
2,095,668	-		BBR_RS19245	0.85	-0.4
2,095,669	-		BBR_RS19245	0.85	+0.4
2,095,677	+		BBR_RS19245	0.87	+0.7
2,095,677	+		BBR_RS19245	0.87	+0.9
2,095,688	+		BBR_RS19245	0.88	+0.3
2,095,696	-		BBR_RS19245	0.90	-0.2
2,095,696	-		BBR_RS19245	0.90	-2.2
2,095,706	-				-0.6
2,095,706	-				+0.1
2,095,721	+				-1.7
2,095,721	+				-2.8
2,095,729	+				-1.5
2,095,729	+				-0.2
2,095,735	+				-0.3
2,095,737	-				+0.4
2,095,806	-				+0.6
2,095,811	-				-1.2
2,095,852	+				-1.2
2,095,852	+				+0.1
2,095,876	+				-0.4
2,095,886	+				-0.9
2,095,894	-				+0.7
2,095,895	-				-0.3
2,095,896	+				-1.0
2,095,903	-				+0.1
2,095,904	-				+0.2
2,095,904	-				+0.6
2,095,921	+				-3.1
2,095,933	-				+0.4
2,095,944	+				-1.4
2,095,954	+				-1.8
2,095,960	-				+1.3
2,095,973	+		BBR_RS19250	0.10	-0.4
2,095,981	-		BBR_RS19250	0.11	-0.1
2,095,981	-		BBR_RS19250	0.11	+0.7
2,095,981	-		BBR_RS19250	0.11	+0.6
2,095,981	-		BBR_RS19250	0.11	+0.4
2,095,981	-		BBR_RS19250	0.11	+1.0
2,095,986	-		BBR_RS19250	0.11	-0.5
2,095,986	-		BBR_RS19250	0.11	+0.6
2,096,023	+		BBR_RS19250	0.14	-1.6
2,096,023	+		BBR_RS19250	0.14	-0.1
2,096,036	+		BBR_RS19250	0.15	+0.5
2,096,036	+		BBR_RS19250	0.15	+0.9
2,096,036	+		BBR_RS19250	0.15	+0.4
2,096,041	-		BBR_RS19250	0.15	-0.1