Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23480

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23475 and AO356_23480 are separated by 119 nucleotidesAO356_23480 and AO356_23485 are separated by 3 nucleotidesAO356_23485 and AO356_23490 overlap by 11 nucleotides AO356_23475: AO356_23475 - polyketide synthase, at 5,264,056 to 5,265,147 _23475 AO356_23480: AO356_23480 - FAD-binding monooxygenase, at 5,265,267 to 5,267,030 _23480 AO356_23485: AO356_23485 - haloacid dehalogenase, at 5,267,034 to 5,267,645 _23485 AO356_23490: AO356_23490 - AMP-dependent synthetase, at 5,267,635 to 5,269,155 _23490 Position (kb) 5265 5266 5267 5268Strain fitness (log2 ratio) -2 -1 0 1 2at 5264.495 kb on + strand, within AO356_23475at 5264.698 kb on - strand, within AO356_23475at 5264.698 kb on - strand, within AO356_23475at 5264.810 kb on + strand, within AO356_23475at 5264.811 kb on - strand, within AO356_23475at 5264.811 kb on - strand, within AO356_23475at 5264.863 kb on + strand, within AO356_23475at 5264.937 kb on - strand, within AO356_23475at 5265.080 kb on + strandat 5265.081 kb on - strandat 5265.091 kb on + strandat 5265.147 kb on + strandat 5265.147 kb on + strandat 5265.158 kb on + strandat 5265.182 kb on - strandat 5265.228 kb on + strandat 5265.229 kb on - strandat 5265.229 kb on - strandat 5265.230 kb on + strandat 5265.230 kb on + strandat 5265.231 kb on - strandat 5265.269 kb on - strandat 5265.339 kb on + strandat 5265.339 kb on + strandat 5265.340 kb on - strandat 5265.340 kb on - strandat 5265.349 kb on + strandat 5265.349 kb on + strandat 5265.349 kb on + strandat 5265.350 kb on - strandat 5265.350 kb on - strandat 5265.523 kb on + strand, within AO356_23480at 5265.524 kb on - strand, within AO356_23480at 5265.524 kb on - strand, within AO356_23480at 5265.571 kb on + strand, within AO356_23480at 5265.572 kb on - strand, within AO356_23480at 5265.574 kb on + strand, within AO356_23480at 5265.756 kb on - strand, within AO356_23480at 5265.756 kb on - strand, within AO356_23480at 5265.799 kb on + strand, within AO356_23480at 5265.799 kb on + strand, within AO356_23480at 5265.799 kb on + strand, within AO356_23480at 5265.799 kb on + strand, within AO356_23480at 5265.800 kb on - strand, within AO356_23480at 5265.800 kb on - strand, within AO356_23480at 5265.800 kb on - strand, within AO356_23480at 5265.814 kb on + strand, within AO356_23480at 5265.815 kb on - strand, within AO356_23480at 5265.820 kb on + strand, within AO356_23480at 5266.039 kb on + strand, within AO356_23480at 5266.039 kb on + strand, within AO356_23480at 5266.040 kb on - strand, within AO356_23480at 5266.061 kb on + strand, within AO356_23480at 5266.061 kb on + strand, within AO356_23480at 5266.062 kb on - strand, within AO356_23480at 5266.063 kb on + strand, within AO356_23480at 5266.063 kb on + strand, within AO356_23480at 5266.205 kb on + strand, within AO356_23480at 5266.206 kb on - strand, within AO356_23480at 5266.300 kb on + strand, within AO356_23480at 5266.300 kb on + strand, within AO356_23480at 5266.301 kb on - strand, within AO356_23480at 5266.360 kb on + strand, within AO356_23480at 5266.360 kb on + strand, within AO356_23480at 5266.361 kb on - strand, within AO356_23480at 5266.450 kb on + strand, within AO356_23480at 5266.717 kb on + strand, within AO356_23480at 5266.718 kb on - strand, within AO356_23480at 5266.729 kb on + strand, within AO356_23480at 5266.729 kb on + strand, within AO356_23480at 5266.730 kb on - strand, within AO356_23480at 5266.730 kb on - strand, within AO356_23480at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.110 kb on + strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.111 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.173 kb on - strand, within AO356_23485at 5267.243 kb on - strand, within AO356_23485at 5267.393 kb on - strand, within AO356_23485at 5267.437 kb on + strand, within AO356_23485at 5267.437 kb on + strand, within AO356_23485at 5267.438 kb on - strand, within AO356_23485at 5267.552 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.563 kb on + strand, within AO356_23485at 5267.564 kb on - strand, within AO356_23485at 5267.802 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.804 kb on + strand, within AO356_23490at 5267.805 kb on - strand, within AO356_23490at 5268.008 kb on + strand, within AO356_23490

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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5,264,495 + AO356_23475 0.40 +0.1
5,264,698 - AO356_23475 0.59 +0.2
5,264,698 - AO356_23475 0.59 -1.6
5,264,810 + AO356_23475 0.69 +0.3
5,264,811 - AO356_23475 0.69 -0.2
5,264,811 - AO356_23475 0.69 -0.9
5,264,863 + AO356_23475 0.74 -0.7
5,264,937 - AO356_23475 0.81 +0.2
5,265,080 + +0.9
5,265,081 - +0.4
5,265,091 + +0.8
5,265,147 + +0.6
5,265,147 + +0.7
5,265,158 + +0.7
5,265,182 - +0.1
5,265,228 + +0.4
5,265,229 - -2.1
5,265,229 - -0.1
5,265,230 + +0.5
5,265,230 + +0.1
5,265,231 - -0.1
5,265,269 - -0.1
5,265,339 + +0.0
5,265,339 + +0.2
5,265,340 - -0.1
5,265,340 - +0.6
5,265,349 + -0.4
5,265,349 + -1.0
5,265,349 + +0.6
5,265,350 - -0.0
5,265,350 - +0.4
5,265,523 + AO356_23480 0.15 -1.2
5,265,524 - AO356_23480 0.15 -1.2
5,265,524 - AO356_23480 0.15 +0.6
5,265,571 + AO356_23480 0.17 +0.2
5,265,572 - AO356_23480 0.17 -1.1
5,265,574 + AO356_23480 0.17 +0.2
5,265,756 - AO356_23480 0.28 +0.1
5,265,756 - AO356_23480 0.28 -0.5
5,265,799 + AO356_23480 0.30 -0.3
5,265,799 + AO356_23480 0.30 -0.4
5,265,799 + AO356_23480 0.30 -0.4
5,265,799 + AO356_23480 0.30 +1.3
5,265,800 - AO356_23480 0.30 +2.4
5,265,800 - AO356_23480 0.30 +0.3
5,265,800 - AO356_23480 0.30 -0.2
5,265,814 + AO356_23480 0.31 -0.9
5,265,815 - AO356_23480 0.31 +0.0
5,265,820 + AO356_23480 0.31 -0.5
5,266,039 + AO356_23480 0.44 +0.8
5,266,039 + AO356_23480 0.44 +0.8
5,266,040 - AO356_23480 0.44 -0.0
5,266,061 + AO356_23480 0.45 +0.7
5,266,061 + AO356_23480 0.45 +0.4
5,266,062 - AO356_23480 0.45 -0.5
5,266,063 + AO356_23480 0.45 +0.1
5,266,063 + AO356_23480 0.45 -0.2
5,266,205 + AO356_23480 0.53 +0.5
5,266,206 - AO356_23480 0.53 +0.6
5,266,300 + AO356_23480 0.59 -0.1
5,266,300 + AO356_23480 0.59 +0.3
5,266,301 - AO356_23480 0.59 +0.9
5,266,360 + AO356_23480 0.62 +0.7
5,266,360 + AO356_23480 0.62 +0.2
5,266,361 - AO356_23480 0.62 +0.6
5,266,450 + AO356_23480 0.67 -1.6
5,266,717 + AO356_23480 0.82 +0.5
5,266,718 - AO356_23480 0.82 +0.2
5,266,729 + AO356_23480 0.83 -0.2
5,266,729 + AO356_23480 0.83 +0.8
5,266,730 - AO356_23480 0.83 +0.7
5,266,730 - AO356_23480 0.83 -0.3
5,267,110 + AO356_23485 0.12 +1.2
5,267,110 + AO356_23485 0.12 -0.2
5,267,110 + AO356_23485 0.12 +0.2
5,267,110 + AO356_23485 0.12 -1.2
5,267,110 + AO356_23485 0.12 +0.9
5,267,111 - AO356_23485 0.13 -0.4
5,267,111 - AO356_23485 0.13 -0.3
5,267,111 - AO356_23485 0.13 -0.7
5,267,111 - AO356_23485 0.13 -0.3
5,267,111 - AO356_23485 0.13 -1.9
5,267,111 - AO356_23485 0.13 +0.1
5,267,173 - AO356_23485 0.23 -0.4
5,267,173 - AO356_23485 0.23 -0.1
5,267,173 - AO356_23485 0.23 +0.5
5,267,243 - AO356_23485 0.34 +0.9
5,267,393 - AO356_23485 0.59 -0.1
5,267,437 + AO356_23485 0.66 -0.9
5,267,437 + AO356_23485 0.66 +0.7
5,267,438 - AO356_23485 0.66 -0.1
5,267,552 + AO356_23485 0.85 -0.5
5,267,563 + AO356_23485 0.86 +0.1
5,267,563 + AO356_23485 0.86 -0.0
5,267,563 + AO356_23485 0.86 -0.1
5,267,564 - AO356_23485 0.87 -1.2
5,267,802 + AO356_23490 0.11 +0.2
5,267,804 + AO356_23490 0.11 +0.2
5,267,804 + AO356_23490 0.11 -0.3
5,267,804 + AO356_23490 0.11 -0.7
5,267,804 + AO356_23490 0.11 -0.1
5,267,805 - AO356_23490 0.11 -1.1
5,268,008 + AO356_23490 0.25 -1.1

Or see this region's nucleotide sequence