Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15505 and AO356_15510 are separated by 128 nucleotides AO356_15510 and AO356_15515 are separated by 21 nucleotides AO356_15515 and AO356_15520 are separated by 118 nucleotides AO356_15520 and AO356_15525 are separated by 161 nucleotides
AO356_15505: AO356_15505 - ABC transporter substrate-binding protein, at 3,511,518 to 3,512,267
_15505
AO356_15510: AO356_15510 - nuclease, at 3,512,396 to 3,512,875
_15510
AO356_15515: AO356_15515 - DNA polymerase III subunit epsilon, at 3,512,897 to 3,513,508
_15515
AO356_15520: AO356_15520 - AsnC family transcriptional regulator, at 3,513,627 to 3,514,079
_15520
AO356_15525: AO356_15525 - hypothetical protein, at 3,514,241 to 3,515,143
_15525
Position (kb)
3512
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1 at 3511.947 kb on + strand, within AO356_15505 at 3511.947 kb on + strand, within AO356_15505 at 3511.947 kb on + strand, within AO356_15505 at 3511.948 kb on - strand, within AO356_15505 at 3512.185 kb on - strand, within AO356_15505 at 3512.185 kb on - strand, within AO356_15505 at 3512.185 kb on - strand, within AO356_15505 at 3512.185 kb on - strand, within AO356_15505 at 3512.220 kb on + strand at 3512.220 kb on + strand at 3512.220 kb on + strand at 3512.221 kb on - strand at 3512.308 kb on + strand at 3512.309 kb on - strand at 3512.337 kb on + strand at 3512.337 kb on + strand at 3512.337 kb on + strand at 3512.338 kb on - strand at 3512.338 kb on - strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.370 kb on + strand at 3512.371 kb on - strand at 3512.371 kb on - strand at 3512.371 kb on - strand at 3512.371 kb on - strand at 3512.371 kb on - strand at 3512.435 kb on + strand at 3512.435 kb on + strand at 3512.436 kb on - strand at 3512.438 kb on + strand at 3512.439 kb on - strand at 3512.439 kb on - strand at 3512.439 kb on - strand at 3512.439 kb on - strand at 3512.439 kb on - strand at 3512.456 kb on + strand, within AO356_15510 at 3512.456 kb on + strand, within AO356_15510 at 3512.456 kb on + strand, within AO356_15510 at 3512.457 kb on - strand, within AO356_15510 at 3512.457 kb on - strand, within AO356_15510 at 3512.474 kb on + strand, within AO356_15510 at 3512.475 kb on - strand, within AO356_15510 at 3512.475 kb on - strand, within AO356_15510 at 3512.525 kb on + strand, within AO356_15510 at 3512.525 kb on + strand, within AO356_15510 at 3512.525 kb on + strand, within AO356_15510 at 3512.525 kb on + strand, within AO356_15510 at 3512.526 kb on - strand, within AO356_15510 at 3512.526 kb on - strand, within AO356_15510 at 3512.615 kb on + strand, within AO356_15510 at 3512.615 kb on + strand, within AO356_15510 at 3512.615 kb on + strand, within AO356_15510 at 3512.615 kb on + strand, within AO356_15510 at 3512.616 kb on - strand, within AO356_15510 at 3512.616 kb on - strand, within AO356_15510 at 3512.837 kb on + strand at 3512.837 kb on + strand at 3512.837 kb on + strand at 3512.837 kb on + strand at 3512.837 kb on + strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3512.838 kb on - strand at 3513.208 kb on + strand, within AO356_15515 at 3513.208 kb on + strand, within AO356_15515 at 3513.209 kb on - strand, within AO356_15515 at 3513.209 kb on - strand, within AO356_15515 at 3513.507 kb on - strand at 3513.628 kb on + strand at 3513.628 kb on + strand at 3513.841 kb on + strand, within AO356_15520 at 3513.842 kb on - strand, within AO356_15520 at 3513.842 kb on - strand, within AO356_15520 at 3514.069 kb on + strand at 3514.069 kb on + strand at 3514.069 kb on + strand at 3514.070 kb on - strand at 3514.070 kb on - strand at 3514.073 kb on + strand at 3514.073 kb on + strand at 3514.073 kb on + strand at 3514.074 kb on - strand at 3514.074 kb on - strand at 3514.120 kb on + strand at 3514.123 kb on - strand at 3514.151 kb on + strand at 3514.151 kb on + strand at 3514.151 kb on + strand at 3514.152 kb on - strand at 3514.175 kb on + strand at 3514.175 kb on + strand at 3514.175 kb on + strand at 3514.176 kb on - strand at 3514.180 kb on + strand at 3514.180 kb on + strand at 3514.202 kb on + strand at 3514.202 kb on + strand at 3514.203 kb on - strand at 3514.203 kb on - strand at 3514.203 kb on - strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.295 kb on + strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.296 kb on - strand at 3514.316 kb on + strand at 3514.316 kb on + strand at 3514.316 kb on + strand at 3514.317 kb on - strand at 3514.317 kb on - strand at 3514.317 kb on - strand at 3514.400 kb on + strand, within AO356_15525 at 3514.400 kb on + strand, within AO356_15525 at 3514.400 kb on + strand, within AO356_15525 at 3514.401 kb on - strand, within AO356_15525 at 3514.401 kb on - strand, within AO356_15525 at 3514.401 kb on - strand, within AO356_15525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 3,511,947 + AO356_15505 0.57 +1.3 3,511,947 + AO356_15505 0.57 -0.0 3,511,947 + AO356_15505 0.57 +0.8 3,511,948 - AO356_15505 0.57 -0.5 3,512,185 - AO356_15505 0.89 +1.1 3,512,185 - AO356_15505 0.89 -0.3 3,512,185 - AO356_15505 0.89 -0.4 3,512,185 - AO356_15505 0.89 +0.5 3,512,220 + +0.1 3,512,220 + +1.1 3,512,220 + -0.6 3,512,221 - +0.9 3,512,308 + +0.2 3,512,309 - +0.0 3,512,337 + -0.8 3,512,337 + +0.2 3,512,337 + -1.2 3,512,338 - -0.9 3,512,338 - -0.1 3,512,370 + +1.4 3,512,370 + +0.3 3,512,370 + -0.1 3,512,370 + +0.3 3,512,370 + +0.7 3,512,370 + -0.8 3,512,370 + +0.5 3,512,370 + -1.4 3,512,371 - +0.5 3,512,371 - +0.2 3,512,371 - +0.2 3,512,371 - +1.0 3,512,371 - +0.4 3,512,435 + +0.1 3,512,435 + +0.4 3,512,436 - -0.6 3,512,438 + -1.8 3,512,439 - +0.1 3,512,439 - +1.0 3,512,439 - -1.8 3,512,439 - -1.3 3,512,439 - -0.1 3,512,456 + AO356_15510 0.12 +0.0 3,512,456 + AO356_15510 0.12 +0.4 3,512,456 + AO356_15510 0.12 +0.5 3,512,457 - AO356_15510 0.13 -0.8 3,512,457 - AO356_15510 0.13 +0.1 3,512,474 + AO356_15510 0.16 -0.5 3,512,475 - AO356_15510 0.16 +0.3 3,512,475 - AO356_15510 0.16 -0.1 3,512,525 + AO356_15510 0.27 +0.7 3,512,525 + AO356_15510 0.27 +1.0 3,512,525 + AO356_15510 0.27 +0.5 3,512,525 + AO356_15510 0.27 +0.5 3,512,526 - AO356_15510 0.27 -0.4 3,512,526 - AO356_15510 0.27 -0.2 3,512,615 + AO356_15510 0.46 -0.2 3,512,615 + AO356_15510 0.46 -0.1 3,512,615 + AO356_15510 0.46 -0.6 3,512,615 + AO356_15510 0.46 +0.0 3,512,616 - AO356_15510 0.46 +0.2 3,512,616 - AO356_15510 0.46 +0.1 3,512,837 + +0.2 3,512,837 + -0.8 3,512,837 + +0.9 3,512,837 + +1.1 3,512,837 + -0.6 3,512,838 - +0.3 3,512,838 - +0.5 3,512,838 - -0.2 3,512,838 - -0.5 3,512,838 - -0.8 3,512,838 - +1.0 3,512,838 - +0.9 3,513,208 + AO356_15515 0.51 -0.8 3,513,208 + AO356_15515 0.51 -0.6 3,513,209 - AO356_15515 0.51 -0.6 3,513,209 - AO356_15515 0.51 -0.1 3,513,507 - +0.6 3,513,628 + -0.2 3,513,628 + -0.2 3,513,841 + AO356_15520 0.47 -0.4 3,513,842 - AO356_15520 0.47 -0.4 3,513,842 - AO356_15520 0.47 +0.1 3,514,069 + -0.8 3,514,069 + +0.2 3,514,069 + +0.2 3,514,070 - -0.0 3,514,070 - -0.3 3,514,073 + +1.0 3,514,073 + +0.4 3,514,073 + +0.5 3,514,074 - -0.0 3,514,074 - +0.4 3,514,120 + +0.7 3,514,123 - +0.2 3,514,151 + -0.5 3,514,151 + +0.6 3,514,151 + +0.5 3,514,152 - +0.3 3,514,175 + +0.4 3,514,175 + +0.1 3,514,175 + -1.4 3,514,176 - +1.1 3,514,180 + +0.2 3,514,180 + +0.4 3,514,202 + -0.5 3,514,202 + +0.5 3,514,203 - +0.2 3,514,203 - -0.0 3,514,203 - -0.4 3,514,295 + +0.7 3,514,295 + +0.4 3,514,295 + -0.3 3,514,295 + +0.0 3,514,295 + +0.4 3,514,295 + -0.9 3,514,295 + +0.3 3,514,295 + -0.7 3,514,296 - -0.9 3,514,296 - -1.2 3,514,296 - -0.8 3,514,296 - -0.1 3,514,296 - +0.4 3,514,296 - +0.3 3,514,296 - -0.6 3,514,316 + -0.5 3,514,316 + -0.3 3,514,316 + -0.1 3,514,317 - -0.3 3,514,317 - +0.3 3,514,317 - -0.4 3,514,400 + AO356_15525 0.18 +0.4 3,514,400 + AO356_15525 0.18 +0.1 3,514,400 + AO356_15525 0.18 -1.5 3,514,401 - AO356_15525 0.18 -0.6 3,514,401 - AO356_15525 0.18 -0.9 3,514,401 - AO356_15525 0.18 +0.2
Or see this region's nucleotide sequence