Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.970.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.968.1 and Xcc-8004.969.1 are separated by 93 nucleotidesXcc-8004.969.1 and Xcc-8004.970.1 are separated by 104 nucleotidesXcc-8004.970.1 and Xcc-8004.971.1 are separated by 203 nucleotidesXcc-8004.971.1 and Xcc-8004.972.1 are separated by 222 nucleotides Xcc-8004.968.1: Xcc-8004.968.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 920,189 to 921,010 Xcc-8004.968.1 Xcc-8004.969.1: Xcc-8004.969.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 921,104 to 921,754 Xcc-8004.969.1 Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656 Xcc-8004.970.1 Xcc-8004.971.1: Xcc-8004.971.1 - GTP-binding protein EngB, at 922,860 to 923,426 Xcc-8004.971.1 Xcc-8004.972.1: Xcc-8004.972.1 - Glutamate--cysteine ligase (EC 6.3.2.2), at 923,649 to 925,286 Xcc-8004.972.1 Position (kb) 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 921.096 kb on + strandat 921.144 kb on + strandat 921.145 kb on - strandat 921.171 kb on + strand, within Xcc-8004.969.1at 921.171 kb on + strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.325 kb on - strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.627 kb on + strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.785 kb on + strandat 921.785 kb on + strandat 921.785 kb on + strandat 921.935 kb on + strandat 921.935 kb on + strandat 921.993 kb on + strand, within Xcc-8004.970.1at 921.994 kb on - strand, within Xcc-8004.970.1at 922.038 kb on - strand, within Xcc-8004.970.1at 922.038 kb on - strand, within Xcc-8004.970.1at 922.061 kb on + strand, within Xcc-8004.970.1at 922.197 kb on - strand, within Xcc-8004.970.1at 922.277 kb on + strand, within Xcc-8004.970.1at 922.350 kb on + strand, within Xcc-8004.970.1at 922.395 kb on - strand, within Xcc-8004.970.1at 922.424 kb on + strand, within Xcc-8004.970.1at 922.424 kb on + strand, within Xcc-8004.970.1at 922.425 kb on - strand, within Xcc-8004.970.1at 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.672 kb on - strandat 923.424 kb on + strandat 923.425 kb on - strandat 923.594 kb on + strandat 923.594 kb on + strandat 923.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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921,096 + -1.3
921,144 + +0.1
921,145 - -0.2
921,171 + Xcc-8004.969.1 0.10 -0.8
921,171 + Xcc-8004.969.1 0.10 -1.1
921,172 - Xcc-8004.969.1 0.10 +0.2
921,172 - Xcc-8004.969.1 0.10 -0.4
921,172 - Xcc-8004.969.1 0.10 -2.8
921,192 + Xcc-8004.969.1 0.14 -0.5
921,192 + Xcc-8004.969.1 0.14 -0.1
921,325 - Xcc-8004.969.1 0.34 +0.2
921,333 + Xcc-8004.969.1 0.35 -1.8
921,333 + Xcc-8004.969.1 0.35 -0.0
921,333 + Xcc-8004.969.1 0.35 -1.4
921,333 + Xcc-8004.969.1 0.35 +2.2
921,333 + Xcc-8004.969.1 0.35 +0.9
921,333 + Xcc-8004.969.1 0.35 +0.2
921,333 + Xcc-8004.969.1 0.35 -1.3
921,334 - Xcc-8004.969.1 0.35 +0.6
921,334 - Xcc-8004.969.1 0.35 -2.0
921,334 - Xcc-8004.969.1 0.35 -2.0
921,453 + Xcc-8004.969.1 0.54 -0.7
921,453 + Xcc-8004.969.1 0.54 -0.3
921,454 - Xcc-8004.969.1 0.54 +0.2
921,454 - Xcc-8004.969.1 0.54 +0.9
921,516 + Xcc-8004.969.1 0.63 -1.4
921,516 + Xcc-8004.969.1 0.63 -0.7
921,516 + Xcc-8004.969.1 0.63 -0.1
921,516 + Xcc-8004.969.1 0.63 +2.2
921,516 + Xcc-8004.969.1 0.63 -0.1
921,516 + Xcc-8004.969.1 0.63 -0.7
921,517 - Xcc-8004.969.1 0.63 +1.3
921,517 - Xcc-8004.969.1 0.63 +1.2
921,517 - Xcc-8004.969.1 0.63 +0.4
921,517 - Xcc-8004.969.1 0.63 -1.7
921,517 - Xcc-8004.969.1 0.63 -2.5
921,517 - Xcc-8004.969.1 0.63 +1.3
921,517 - Xcc-8004.969.1 0.63 +0.2
921,517 - Xcc-8004.969.1 0.63 +0.6
921,517 - Xcc-8004.969.1 0.63 +0.9
921,627 + Xcc-8004.969.1 0.80 +1.0
921,628 - Xcc-8004.969.1 0.80 +0.7
921,628 - Xcc-8004.969.1 0.80 +0.7
921,628 - Xcc-8004.969.1 0.80 -1.5
921,654 + Xcc-8004.969.1 0.84 -1.1
921,654 + Xcc-8004.969.1 0.84 -1.3
921,654 + Xcc-8004.969.1 0.84 -1.8
921,654 + Xcc-8004.969.1 0.84 +0.3
921,654 + Xcc-8004.969.1 0.84 -2.7
921,654 + Xcc-8004.969.1 0.84 +1.8
921,654 + Xcc-8004.969.1 0.84 -0.2
921,654 + Xcc-8004.969.1 0.84 -0.8
921,654 + Xcc-8004.969.1 0.84 -2.3
921,654 + Xcc-8004.969.1 0.84 -1.1
921,654 + Xcc-8004.969.1 0.84 +2.5
921,655 - Xcc-8004.969.1 0.85 +0.2
921,655 - Xcc-8004.969.1 0.85 +0.6
921,655 - Xcc-8004.969.1 0.85 +0.7
921,655 - Xcc-8004.969.1 0.85 -0.8
921,655 - Xcc-8004.969.1 0.85 +1.5
921,655 - Xcc-8004.969.1 0.85 -0.8
921,655 - Xcc-8004.969.1 0.85 -0.6
921,655 - Xcc-8004.969.1 0.85 +0.4
921,655 - Xcc-8004.969.1 0.85 +0.2
921,655 - Xcc-8004.969.1 0.85 +0.5
921,785 + +1.5
921,785 + +0.2
921,785 + +1.1
921,935 + -2.4
921,935 + +1.4
921,993 + Xcc-8004.970.1 0.17 +0.2
921,994 - Xcc-8004.970.1 0.17 -0.5
922,038 - Xcc-8004.970.1 0.22 +2.6
922,038 - Xcc-8004.970.1 0.22 -0.1
922,061 + Xcc-8004.970.1 0.25 +0.5
922,197 - Xcc-8004.970.1 0.42 +3.2
922,277 + Xcc-8004.970.1 0.52 -1.4
922,350 + Xcc-8004.970.1 0.62 +0.3
922,395 - Xcc-8004.970.1 0.67 +3.0
922,424 + Xcc-8004.970.1 0.71 +0.3
922,424 + Xcc-8004.970.1 0.71 -1.6
922,425 - Xcc-8004.970.1 0.71 -2.1
922,662 - +0.6
922,662 - +1.0
922,662 - -0.1
922,662 - +1.2
922,662 - +0.8
922,662 - -0.5
922,662 - +0.4
922,672 - -0.6
923,424 + -2.3
923,425 - +0.9
923,594 + -1.0
923,594 + -0.3
923,595 - +0.4

Or see this region's nucleotide sequence