Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.693.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.691.1 and Xcc-8004.692.1 overlap by 1 nucleotidesXcc-8004.692.1 and Xcc-8004.693.1 are separated by 239 nucleotidesXcc-8004.693.1 and Xcc-8004.694.1 are separated by 51 nucleotidesXcc-8004.694.1 and Xcc-8004.696.1 are separated by 190 nucleotides Xcc-8004.691.1: Xcc-8004.691.1 - Dienelactone hydrolase, at 641,646 to 642,122 Xcc-8004.691.1 Xcc-8004.692.1: Xcc-8004.692.1 - Dienelactone hydrolase family, at 642,122 to 642,532 Xcc-8004.692.1 Xcc-8004.693.1: Xcc-8004.693.1 - FIG01210708: hypothetical protein, at 642,772 to 644,886 Xcc-8004.693.1 Xcc-8004.694.1: Xcc-8004.694.1 - hypothetical protein, at 644,938 to 645,069 Xcc-8004.694.1 Xcc-8004.696.1: Xcc-8004.696.1 - FIG01212883: hypothetical protein, at 645,260 to 647,416 Xcc-8004.696.1 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 641.808 kb on + strand, within Xcc-8004.691.1at 641.808 kb on + strand, within Xcc-8004.691.1at 641.808 kb on + strand, within Xcc-8004.691.1at 641.809 kb on - strand, within Xcc-8004.691.1at 641.859 kb on + strand, within Xcc-8004.691.1at 641.859 kb on + strand, within Xcc-8004.691.1at 641.869 kb on - strand, within Xcc-8004.691.1at 641.982 kb on + strand, within Xcc-8004.691.1at 641.983 kb on - strand, within Xcc-8004.691.1at 642.220 kb on + strand, within Xcc-8004.692.1at 642.270 kb on - strand, within Xcc-8004.692.1at 642.270 kb on - strand, within Xcc-8004.692.1at 642.330 kb on - strand, within Xcc-8004.692.1at 642.330 kb on - strand, within Xcc-8004.692.1at 642.371 kb on + strand, within Xcc-8004.692.1at 642.372 kb on - strand, within Xcc-8004.692.1at 642.404 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.413 kb on + strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.414 kb on - strand, within Xcc-8004.692.1at 642.726 kb on + strandat 642.727 kb on - strandat 642.829 kb on - strandat 642.829 kb on - strandat 642.860 kb on - strandat 642.960 kb on + strandat 642.979 kb on - strandat 642.988 kb on + strand, within Xcc-8004.693.1at 642.998 kb on + strand, within Xcc-8004.693.1at 643.034 kb on + strand, within Xcc-8004.693.1at 643.034 kb on + strand, within Xcc-8004.693.1at 643.034 kb on + strand, within Xcc-8004.693.1at 643.034 kb on + strand, within Xcc-8004.693.1at 643.035 kb on - strand, within Xcc-8004.693.1at 643.035 kb on - strand, within Xcc-8004.693.1at 643.035 kb on - strand, within Xcc-8004.693.1at 643.035 kb on - strand, within Xcc-8004.693.1at 643.035 kb on - strand, within Xcc-8004.693.1at 643.051 kb on + strand, within Xcc-8004.693.1at 643.052 kb on - strand, within Xcc-8004.693.1at 643.227 kb on - strand, within Xcc-8004.693.1at 643.229 kb on + strand, within Xcc-8004.693.1at 643.463 kb on + strand, within Xcc-8004.693.1at 644.149 kb on + strand, within Xcc-8004.693.1at 644.150 kb on - strand, within Xcc-8004.693.1at 644.187 kb on - strand, within Xcc-8004.693.1at 644.231 kb on - strand, within Xcc-8004.693.1at 644.632 kb on + strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.808 kb on + strandat 644.808 kb on + strandat 644.809 kb on - strandat 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.042 kb on - strand, within Xcc-8004.694.1at 645.103 kb on + strandat 645.103 kb on + strandat 645.103 kb on + strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.124 kb on - strandat 645.124 kb on - strandat 645.144 kb on + strandat 645.144 kb on + strandat 645.145 kb on - strandat 645.145 kb on - strandat 645.145 kb on - strandat 645.148 kb on + strandat 645.148 kb on + strandat 645.149 kb on - strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.212 kb on + strandat 645.213 kb on - strandat 645.213 kb on - strandat 645.420 kb on + strandat 645.420 kb on + strandat 645.421 kb on - strandat 645.421 kb on - strandat 645.456 kb on + strandat 645.553 kb on + strand, within Xcc-8004.696.1at 645.553 kb on + strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.649 kb on - strand, within Xcc-8004.696.1at 645.682 kb on + strand, within Xcc-8004.696.1at 645.683 kb on - strand, within Xcc-8004.696.1at 645.845 kb on + strand, within Xcc-8004.696.1at 645.881 kb on - strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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641,808 + Xcc-8004.691.1 0.34 +0.6
641,808 + Xcc-8004.691.1 0.34 +1.5
641,808 + Xcc-8004.691.1 0.34 +0.4
641,809 - Xcc-8004.691.1 0.34 -3.1
641,859 + Xcc-8004.691.1 0.45 +0.2
641,859 + Xcc-8004.691.1 0.45 -0.1
641,869 - Xcc-8004.691.1 0.47 +1.2
641,982 + Xcc-8004.691.1 0.70 +1.2
641,983 - Xcc-8004.691.1 0.71 +1.2
642,220 + Xcc-8004.692.1 0.24 -0.5
642,270 - Xcc-8004.692.1 0.36 +0.0
642,270 - Xcc-8004.692.1 0.36 -0.8
642,330 - Xcc-8004.692.1 0.51 +1.4
642,330 - Xcc-8004.692.1 0.51 -1.0
642,371 + Xcc-8004.692.1 0.61 -0.6
642,372 - Xcc-8004.692.1 0.61 -1.7
642,404 + Xcc-8004.692.1 0.69 -0.6
642,413 + Xcc-8004.692.1 0.71 -1.8
642,413 + Xcc-8004.692.1 0.71 -1.9
642,413 + Xcc-8004.692.1 0.71 +1.8
642,413 + Xcc-8004.692.1 0.71 +4.6
642,413 + Xcc-8004.692.1 0.71 +0.4
642,413 + Xcc-8004.692.1 0.71 -0.6
642,413 + Xcc-8004.692.1 0.71 +1.7
642,413 + Xcc-8004.692.1 0.71 -1.5
642,413 + Xcc-8004.692.1 0.71 +1.4
642,414 - Xcc-8004.692.1 0.71 +0.9
642,414 - Xcc-8004.692.1 0.71 -1.1
642,414 - Xcc-8004.692.1 0.71 -0.4
642,414 - Xcc-8004.692.1 0.71 +0.9
642,414 - Xcc-8004.692.1 0.71 +1.2
642,414 - Xcc-8004.692.1 0.71 -0.2
642,414 - Xcc-8004.692.1 0.71 +0.0
642,726 + -2.7
642,727 - -0.3
642,829 - -1.7
642,829 - -0.4
642,860 - -1.2
642,960 + -1.6
642,979 - -0.3
642,988 + Xcc-8004.693.1 0.10 +1.5
642,998 + Xcc-8004.693.1 0.11 +0.2
643,034 + Xcc-8004.693.1 0.12 +0.7
643,034 + Xcc-8004.693.1 0.12 -1.8
643,034 + Xcc-8004.693.1 0.12 +0.5
643,034 + Xcc-8004.693.1 0.12 +0.6
643,035 - Xcc-8004.693.1 0.12 -0.2
643,035 - Xcc-8004.693.1 0.12 -1.6
643,035 - Xcc-8004.693.1 0.12 +0.6
643,035 - Xcc-8004.693.1 0.12 -0.2
643,035 - Xcc-8004.693.1 0.12 -0.3
643,051 + Xcc-8004.693.1 0.13 +0.1
643,052 - Xcc-8004.693.1 0.13 +0.0
643,227 - Xcc-8004.693.1 0.22 +2.0
643,229 + Xcc-8004.693.1 0.22 -0.4
643,463 + Xcc-8004.693.1 0.33 +1.2
644,149 + Xcc-8004.693.1 0.65 +1.6
644,150 - Xcc-8004.693.1 0.65 -1.1
644,187 - Xcc-8004.693.1 0.67 +0.4
644,231 - Xcc-8004.693.1 0.69 +0.4
644,632 + Xcc-8004.693.1 0.88 +1.6
644,633 - Xcc-8004.693.1 0.88 -0.6
644,633 - Xcc-8004.693.1 0.88 -1.5
644,633 - Xcc-8004.693.1 0.88 -0.4
644,808 + +1.2
644,808 + -0.6
644,809 - -2.3
644,974 - Xcc-8004.694.1 0.27 +1.3
644,974 - Xcc-8004.694.1 0.27 +0.4
644,974 - Xcc-8004.694.1 0.27 -0.8
644,974 - Xcc-8004.694.1 0.27 +0.1
645,041 + Xcc-8004.694.1 0.78 +0.3
645,041 + Xcc-8004.694.1 0.78 -0.8
645,041 + Xcc-8004.694.1 0.78 -0.7
645,042 - Xcc-8004.694.1 0.79 +1.4
645,103 + -0.5
645,103 + +2.3
645,103 + +0.4
645,104 - +0.7
645,104 - -1.1
645,104 - -1.0
645,104 - +0.3
645,124 - -1.4
645,124 - +0.4
645,144 + +2.2
645,144 + -2.4
645,145 - -2.4
645,145 - -1.4
645,145 - -0.6
645,148 + +0.1
645,148 + -2.1
645,149 - -0.0
645,169 + +0.5
645,169 + -1.1
645,169 + +0.1
645,169 + +1.9
645,170 - -0.9
645,170 - -0.3
645,170 - +0.8
645,170 - +0.7
645,170 - -2.1
645,212 + -1.0
645,213 - -1.9
645,213 - -0.2
645,420 + -1.3
645,420 + +0.6
645,421 - +0.4
645,421 - +0.3
645,456 + -1.3
645,553 + Xcc-8004.696.1 0.14 -0.7
645,553 + Xcc-8004.696.1 0.14 +0.4
645,554 - Xcc-8004.696.1 0.14 +1.2
645,554 - Xcc-8004.696.1 0.14 +0.3
645,554 - Xcc-8004.696.1 0.14 +0.3
645,554 - Xcc-8004.696.1 0.14 -1.0
645,554 - Xcc-8004.696.1 0.14 +1.6
645,649 - Xcc-8004.696.1 0.18 -2.5
645,682 + Xcc-8004.696.1 0.20 -1.8
645,683 - Xcc-8004.696.1 0.20 +1.9
645,845 + Xcc-8004.696.1 0.27 -0.6
645,881 - Xcc-8004.696.1 0.29 +0.3
645,885 + Xcc-8004.696.1 0.29 -0.3
645,885 + Xcc-8004.696.1 0.29 +0.1
645,885 + Xcc-8004.696.1 0.29 +1.2
645,885 + Xcc-8004.696.1 0.29 -0.3
645,885 + Xcc-8004.696.1 0.29 +2.7
645,885 + Xcc-8004.696.1 0.29 +1.5
645,885 + Xcc-8004.696.1 0.29 -0.7
645,885 + Xcc-8004.696.1 0.29 +0.6
645,886 - Xcc-8004.696.1 0.29 -1.0
645,886 - Xcc-8004.696.1 0.29 -2.1
645,886 - Xcc-8004.696.1 0.29 -0.2
645,886 - Xcc-8004.696.1 0.29 +2.2
645,886 - Xcc-8004.696.1 0.29 -0.1
645,886 - Xcc-8004.696.1 0.29 -0.6
645,886 - Xcc-8004.696.1 0.29 +1.5

Or see this region's nucleotide sequence