Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5337.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5334.1 and Xcc-8004.5335.1 are separated by 22 nucleotidesXcc-8004.5335.1 and Xcc-8004.5336.1 are separated by 87 nucleotidesXcc-8004.5336.1 and Xcc-8004.5337.1 are separated by 24 nucleotidesXcc-8004.5337.1 and Xcc-8004.5338.1 are separated by 291 nucleotides Xcc-8004.5334.1: Xcc-8004.5334.1 - hypothetical protein, at 5,069,098 to 5,069,310 Xcc-8004.5334.1 Xcc-8004.5335.1: Xcc-8004.5335.1 - FIG01214241: hypothetical protein, at 5,069,333 to 5,069,662 Xcc-8004.5335.1 Xcc-8004.5336.1: Xcc-8004.5336.1 - HigA protein (antitoxin to HigB), at 5,069,750 to 5,070,019 Xcc-8004.5336.1 Xcc-8004.5337.1: Xcc-8004.5337.1 - Similar to ribosomal large subunit pseudouridine synthase A, at 5,070,044 to 5,071,009 Xcc-8004.5337.1 Xcc-8004.5338.1: Xcc-8004.5338.1 - FIG01210434: hypothetical protein, at 5,071,301 to 5,072,137 Xcc-8004.5338.1 Position (kb) 5070 5071 5072Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5069.044 kb on + strandat 5069.044 kb on + strandat 5069.045 kb on - strandat 5069.045 kb on - strandat 5069.075 kb on + strandat 5069.099 kb on + strandat 5069.108 kb on + strandat 5069.108 kb on + strandat 5069.108 kb on + strandat 5069.109 kb on - strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.114 kb on + strandat 5069.115 kb on - strandat 5069.115 kb on - strandat 5069.197 kb on + strand, within Xcc-8004.5334.1at 5069.259 kb on + strand, within Xcc-8004.5334.1at 5069.274 kb on + strand, within Xcc-8004.5334.1at 5069.275 kb on - strand, within Xcc-8004.5334.1at 5069.275 kb on - strand, within Xcc-8004.5334.1at 5069.310 kb on + strandat 5069.310 kb on + strandat 5069.310 kb on + strandat 5069.310 kb on + strandat 5069.310 kb on + strandat 5069.311 kb on - strandat 5069.311 kb on - strandat 5069.311 kb on - strandat 5069.311 kb on - strandat 5069.311 kb on - strandat 5069.334 kb on + strandat 5069.334 kb on + strandat 5069.335 kb on - strandat 5069.539 kb on + strand, within Xcc-8004.5335.1at 5069.741 kb on - strandat 5069.741 kb on - strandat 5069.742 kb on + strandat 5069.742 kb on + strandat 5069.742 kb on + strandat 5069.743 kb on - strandat 5069.743 kb on - strandat 5069.748 kb on + strandat 5069.748 kb on + strandat 5069.748 kb on + strandat 5069.749 kb on - strandat 5069.749 kb on - strandat 5069.758 kb on + strandat 5069.759 kb on - strandat 5069.794 kb on + strand, within Xcc-8004.5336.1at 5069.804 kb on + strand, within Xcc-8004.5336.1at 5069.805 kb on - strand, within Xcc-8004.5336.1at 5069.805 kb on - strand, within Xcc-8004.5336.1at 5069.897 kb on + strand, within Xcc-8004.5336.1at 5069.897 kb on + strand, within Xcc-8004.5336.1at 5069.897 kb on + strand, within Xcc-8004.5336.1at 5069.898 kb on - strand, within Xcc-8004.5336.1at 5069.898 kb on - strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.901 kb on + strand, within Xcc-8004.5336.1at 5069.902 kb on - strand, within Xcc-8004.5336.1at 5069.902 kb on - strand, within Xcc-8004.5336.1at 5069.902 kb on - strand, within Xcc-8004.5336.1at 5069.902 kb on - strand, within Xcc-8004.5336.1at 5070.013 kb on - strandat 5070.013 kb on - strandat 5070.017 kb on + strandat 5070.017 kb on + strandat 5070.027 kb on + strandat 5070.027 kb on + strandat 5070.027 kb on + strandat 5070.028 kb on - strandat 5070.037 kb on + strandat 5070.038 kb on - strandat 5070.224 kb on - strand, within Xcc-8004.5337.1at 5070.224 kb on - strand, within Xcc-8004.5337.1at 5070.271 kb on - strand, within Xcc-8004.5337.1at 5070.390 kb on + strand, within Xcc-8004.5337.1at 5070.390 kb on + strand, within Xcc-8004.5337.1at 5070.432 kb on + strand, within Xcc-8004.5337.1at 5070.432 kb on + strand, within Xcc-8004.5337.1at 5070.433 kb on - strand, within Xcc-8004.5337.1at 5070.472 kb on - strand, within Xcc-8004.5337.1at 5070.472 kb on - strand, within Xcc-8004.5337.1at 5070.472 kb on - strand, within Xcc-8004.5337.1at 5070.472 kb on - strand, within Xcc-8004.5337.1at 5070.599 kb on + strand, within Xcc-8004.5337.1at 5070.599 kb on + strand, within Xcc-8004.5337.1at 5070.600 kb on - strand, within Xcc-8004.5337.1at 5070.603 kb on + strand, within Xcc-8004.5337.1at 5070.603 kb on + strand, within Xcc-8004.5337.1at 5070.603 kb on + strand, within Xcc-8004.5337.1at 5070.603 kb on + strand, within Xcc-8004.5337.1at 5070.603 kb on + strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.604 kb on - strand, within Xcc-8004.5337.1at 5070.684 kb on - strand, within Xcc-8004.5337.1at 5070.723 kb on + strand, within Xcc-8004.5337.1at 5070.723 kb on + strand, within Xcc-8004.5337.1at 5070.723 kb on + strand, within Xcc-8004.5337.1at 5070.723 kb on + strand, within Xcc-8004.5337.1at 5070.724 kb on - strand, within Xcc-8004.5337.1at 5070.724 kb on - strand, within Xcc-8004.5337.1at 5070.724 kb on - strand, within Xcc-8004.5337.1at 5070.726 kb on + strand, within Xcc-8004.5337.1at 5070.726 kb on + strand, within Xcc-8004.5337.1at 5070.727 kb on - strand, within Xcc-8004.5337.1at 5070.727 kb on - strand, within Xcc-8004.5337.1at 5070.727 kb on - strand, within Xcc-8004.5337.1at 5070.970 kb on - strandat 5070.982 kb on + strandat 5070.982 kb on + strandat 5070.982 kb on + strandat 5070.982 kb on + strandat 5070.982 kb on + strandat 5070.983 kb on - strandat 5070.983 kb on - strandat 5070.983 kb on - strandat 5070.983 kb on - strandat 5071.131 kb on + strandat 5071.131 kb on + strandat 5071.132 kb on - strandat 5071.132 kb on - strandat 5071.209 kb on - strandat 5071.272 kb on - strandat 5071.385 kb on + strand, within Xcc-8004.5338.1at 5071.385 kb on + strand, within Xcc-8004.5338.1at 5071.385 kb on + strand, within Xcc-8004.5338.1at 5071.386 kb on - strand, within Xcc-8004.5338.1at 5071.386 kb on - strand, within Xcc-8004.5338.1at 5071.400 kb on + strand, within Xcc-8004.5338.1at 5071.497 kb on + strand, within Xcc-8004.5338.1at 5071.497 kb on + strand, within Xcc-8004.5338.1at 5071.498 kb on - strand, within Xcc-8004.5338.1at 5071.498 kb on - strand, within Xcc-8004.5338.1at 5071.533 kb on - strand, within Xcc-8004.5338.1at 5071.533 kb on - strand, within Xcc-8004.5338.1at 5071.586 kb on - strand, within Xcc-8004.5338.1at 5071.620 kb on + strand, within Xcc-8004.5338.1at 5071.620 kb on + strand, within Xcc-8004.5338.1at 5071.620 kb on + strand, within Xcc-8004.5338.1at 5071.621 kb on - strand, within Xcc-8004.5338.1at 5071.621 kb on - strand, within Xcc-8004.5338.1at 5071.621 kb on - strand, within Xcc-8004.5338.1at 5071.621 kb on - strand, within Xcc-8004.5338.1at 5071.731 kb on + strand, within Xcc-8004.5338.1at 5071.847 kb on + strand, within Xcc-8004.5338.1at 5071.847 kb on + strand, within Xcc-8004.5338.1at 5071.847 kb on + strand, within Xcc-8004.5338.1at 5071.847 kb on + strand, within Xcc-8004.5338.1at 5071.848 kb on - strand, within Xcc-8004.5338.1at 5071.848 kb on - strand, within Xcc-8004.5338.1at 5071.852 kb on + strand, within Xcc-8004.5338.1at 5071.852 kb on + strand, within Xcc-8004.5338.1at 5071.852 kb on + strand, within Xcc-8004.5338.1at 5071.852 kb on + strand, within Xcc-8004.5338.1at 5071.853 kb on - strand, within Xcc-8004.5338.1at 5071.853 kb on - strand, within Xcc-8004.5338.1at 5071.853 kb on - strand, within Xcc-8004.5338.1at 5071.853 kb on - strand, within Xcc-8004.5338.1at 5071.972 kb on - strand, within Xcc-8004.5338.1at 5071.972 kb on - strand, within Xcc-8004.5338.1at 5071.972 kb on - strand, within Xcc-8004.5338.1at 5071.972 kb on - strand, within Xcc-8004.5338.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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5,069,044 + -0.5
5,069,044 + -0.7
5,069,045 - +0.2
5,069,045 - -1.7
5,069,075 + +2.1
5,069,099 + +0.4
5,069,108 + +3.9
5,069,108 + +0.7
5,069,108 + +3.0
5,069,109 - -0.6
5,069,114 + -1.0
5,069,114 + +0.0
5,069,114 + +0.9
5,069,114 + +1.2
5,069,114 + -1.0
5,069,114 + +1.1
5,069,114 + -2.2
5,069,115 - +1.6
5,069,115 - +0.5
5,069,197 + Xcc-8004.5334.1 0.46 +0.6
5,069,259 + Xcc-8004.5334.1 0.76 -0.9
5,069,274 + Xcc-8004.5334.1 0.83 +0.6
5,069,275 - Xcc-8004.5334.1 0.83 +0.9
5,069,275 - Xcc-8004.5334.1 0.83 +0.8
5,069,310 + +2.2
5,069,310 + -0.1
5,069,310 + +1.6
5,069,310 + +1.5
5,069,310 + +0.8
5,069,311 - -0.6
5,069,311 - +0.8
5,069,311 - +0.9
5,069,311 - -0.8
5,069,311 - +0.3
5,069,334 + +0.4
5,069,334 + +2.1
5,069,335 - +0.4
5,069,539 + Xcc-8004.5335.1 0.62 +1.3
5,069,741 - -0.9
5,069,741 - +2.1
5,069,742 + +1.1
5,069,742 + -0.0
5,069,742 + +0.2
5,069,743 - +1.0
5,069,743 - -0.5
5,069,748 + +0.1
5,069,748 + -0.0
5,069,748 + -0.9
5,069,749 - +0.9
5,069,749 - +0.1
5,069,758 + +0.1
5,069,759 - +0.4
5,069,794 + Xcc-8004.5336.1 0.16 -0.5
5,069,804 + Xcc-8004.5336.1 0.20 +4.1
5,069,805 - Xcc-8004.5336.1 0.20 -0.7
5,069,805 - Xcc-8004.5336.1 0.20 -0.3
5,069,897 + Xcc-8004.5336.1 0.54 -0.0
5,069,897 + Xcc-8004.5336.1 0.54 -0.3
5,069,897 + Xcc-8004.5336.1 0.54 +0.7
5,069,898 - Xcc-8004.5336.1 0.55 -0.2
5,069,898 - Xcc-8004.5336.1 0.55 +2.5
5,069,901 + Xcc-8004.5336.1 0.56 -0.6
5,069,901 + Xcc-8004.5336.1 0.56 -0.5
5,069,901 + Xcc-8004.5336.1 0.56 +0.4
5,069,901 + Xcc-8004.5336.1 0.56 -2.4
5,069,901 + Xcc-8004.5336.1 0.56 +0.5
5,069,901 + Xcc-8004.5336.1 0.56 +0.4
5,069,901 + Xcc-8004.5336.1 0.56 -1.5
5,069,901 + Xcc-8004.5336.1 0.56 +1.4
5,069,901 + Xcc-8004.5336.1 0.56 -0.6
5,069,901 + Xcc-8004.5336.1 0.56 -1.5
5,069,901 + Xcc-8004.5336.1 0.56 +0.5
5,069,901 + Xcc-8004.5336.1 0.56 +0.4
5,069,902 - Xcc-8004.5336.1 0.56 -1.0
5,069,902 - Xcc-8004.5336.1 0.56 -0.2
5,069,902 - Xcc-8004.5336.1 0.56 -1.2
5,069,902 - Xcc-8004.5336.1 0.56 +1.1
5,070,013 - +1.6
5,070,013 - -0.9
5,070,017 + -1.7
5,070,017 + -0.5
5,070,027 + +1.0
5,070,027 + -0.9
5,070,027 + +0.2
5,070,028 - -0.9
5,070,037 + -0.6
5,070,038 - +1.3
5,070,224 - Xcc-8004.5337.1 0.19 +0.1
5,070,224 - Xcc-8004.5337.1 0.19 +0.9
5,070,271 - Xcc-8004.5337.1 0.23 +1.1
5,070,390 + Xcc-8004.5337.1 0.36 -0.9
5,070,390 + Xcc-8004.5337.1 0.36 -0.9
5,070,432 + Xcc-8004.5337.1 0.40 -0.5
5,070,432 + Xcc-8004.5337.1 0.40 +1.6
5,070,433 - Xcc-8004.5337.1 0.40 -0.9
5,070,472 - Xcc-8004.5337.1 0.44 -1.3
5,070,472 - Xcc-8004.5337.1 0.44 +0.5
5,070,472 - Xcc-8004.5337.1 0.44 +0.2
5,070,472 - Xcc-8004.5337.1 0.44 -2.2
5,070,599 + Xcc-8004.5337.1 0.57 -0.9
5,070,599 + Xcc-8004.5337.1 0.57 -1.2
5,070,600 - Xcc-8004.5337.1 0.58 +1.0
5,070,603 + Xcc-8004.5337.1 0.58 +1.6
5,070,603 + Xcc-8004.5337.1 0.58 -0.0
5,070,603 + Xcc-8004.5337.1 0.58 -0.7
5,070,603 + Xcc-8004.5337.1 0.58 -0.5
5,070,603 + Xcc-8004.5337.1 0.58 +0.3
5,070,604 - Xcc-8004.5337.1 0.58 +0.5
5,070,604 - Xcc-8004.5337.1 0.58 +1.0
5,070,604 - Xcc-8004.5337.1 0.58 +0.0
5,070,604 - Xcc-8004.5337.1 0.58 +0.1
5,070,604 - Xcc-8004.5337.1 0.58 -0.9
5,070,604 - Xcc-8004.5337.1 0.58 +0.1
5,070,604 - Xcc-8004.5337.1 0.58 -0.4
5,070,604 - Xcc-8004.5337.1 0.58 -1.2
5,070,604 - Xcc-8004.5337.1 0.58 -1.0
5,070,604 - Xcc-8004.5337.1 0.58 -1.2
5,070,604 - Xcc-8004.5337.1 0.58 -0.7
5,070,684 - Xcc-8004.5337.1 0.66 +0.1
5,070,723 + Xcc-8004.5337.1 0.70 -1.3
5,070,723 + Xcc-8004.5337.1 0.70 +1.4
5,070,723 + Xcc-8004.5337.1 0.70 -0.6
5,070,723 + Xcc-8004.5337.1 0.70 -1.9
5,070,724 - Xcc-8004.5337.1 0.70 -0.1
5,070,724 - Xcc-8004.5337.1 0.70 +1.9
5,070,724 - Xcc-8004.5337.1 0.70 -1.9
5,070,726 + Xcc-8004.5337.1 0.71 -0.6
5,070,726 + Xcc-8004.5337.1 0.71 -1.7
5,070,727 - Xcc-8004.5337.1 0.71 -1.5
5,070,727 - Xcc-8004.5337.1 0.71 -0.9
5,070,727 - Xcc-8004.5337.1 0.71 +1.1
5,070,970 - +2.0
5,070,982 + -0.2
5,070,982 + -0.5
5,070,982 + -0.0
5,070,982 + -2.3
5,070,982 + -0.2
5,070,983 - -1.2
5,070,983 - -1.4
5,070,983 - +0.9
5,070,983 - -1.0
5,071,131 + -2.3
5,071,131 + -1.5
5,071,132 - -2.2
5,071,132 - -0.3
5,071,209 - -0.9
5,071,272 - +1.1
5,071,385 + Xcc-8004.5338.1 0.10 -2.1
5,071,385 + Xcc-8004.5338.1 0.10 +0.4
5,071,385 + Xcc-8004.5338.1 0.10 +0.1
5,071,386 - Xcc-8004.5338.1 0.10 +1.2
5,071,386 - Xcc-8004.5338.1 0.10 +2.0
5,071,400 + Xcc-8004.5338.1 0.12 +1.0
5,071,497 + Xcc-8004.5338.1 0.23 -0.3
5,071,497 + Xcc-8004.5338.1 0.23 +1.6
5,071,498 - Xcc-8004.5338.1 0.24 -0.5
5,071,498 - Xcc-8004.5338.1 0.24 -1.3
5,071,533 - Xcc-8004.5338.1 0.28 -1.8
5,071,533 - Xcc-8004.5338.1 0.28 +1.3
5,071,586 - Xcc-8004.5338.1 0.34 -0.2
5,071,620 + Xcc-8004.5338.1 0.38 -2.7
5,071,620 + Xcc-8004.5338.1 0.38 +0.7
5,071,620 + Xcc-8004.5338.1 0.38 +0.2
5,071,621 - Xcc-8004.5338.1 0.38 +0.1
5,071,621 - Xcc-8004.5338.1 0.38 -0.3
5,071,621 - Xcc-8004.5338.1 0.38 -0.9
5,071,621 - Xcc-8004.5338.1 0.38 -0.6
5,071,731 + Xcc-8004.5338.1 0.51 +0.0
5,071,847 + Xcc-8004.5338.1 0.65 -1.3
5,071,847 + Xcc-8004.5338.1 0.65 +0.1
5,071,847 + Xcc-8004.5338.1 0.65 -0.0
5,071,847 + Xcc-8004.5338.1 0.65 +0.7
5,071,848 - Xcc-8004.5338.1 0.65 +0.3
5,071,848 - Xcc-8004.5338.1 0.65 -0.8
5,071,852 + Xcc-8004.5338.1 0.66 -0.7
5,071,852 + Xcc-8004.5338.1 0.66 +0.9
5,071,852 + Xcc-8004.5338.1 0.66 +0.2
5,071,852 + Xcc-8004.5338.1 0.66 -0.2
5,071,853 - Xcc-8004.5338.1 0.66 +1.1
5,071,853 - Xcc-8004.5338.1 0.66 +0.8
5,071,853 - Xcc-8004.5338.1 0.66 -0.4
5,071,853 - Xcc-8004.5338.1 0.66 -0.5
5,071,972 - Xcc-8004.5338.1 0.80 -2.1
5,071,972 - Xcc-8004.5338.1 0.80 +1.4
5,071,972 - Xcc-8004.5338.1 0.80 -1.2
5,071,972 - Xcc-8004.5338.1 0.80 -0.3

Or see this region's nucleotide sequence