Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5229.1 and Xcc-8004.5230.1 are separated by 129 nucleotides Xcc-8004.5230.1 and Xcc-8004.5231.1 are separated by 364 nucleotides Xcc-8004.5231.1 and Xcc-8004.5232.1 overlap by 7 nucleotides Xcc-8004.5232.1 and Xcc-8004.5233.1 overlap by 43 nucleotides
Xcc-8004.5229.1: Xcc-8004.5229.1 - ring canal kelch-like protein, at 4,965,163 to 4,966,221
Xcc-8004.5229.1
Xcc-8004.5230.1: Xcc-8004.5230.1 - Gluconolactonase (EC 3.1.1.17), at 4,966,351 to 4,967,388
Xcc-8004.5230.1
Xcc-8004.5231.1: Xcc-8004.5231.1 - hypothetical protein, at 4,967,753 to 4,967,986
Xcc-8004.5231.1
Xcc-8004.5232.1: Xcc-8004.5232.1 - hypothetical protein, at 4,967,980 to 4,968,309
Xcc-8004.5232.1
Xcc-8004.5233.1: Xcc-8004.5233.1 - hypothetical protein, at 4,968,267 to 4,969,223
Xcc-8004.5233.1
Position (kb) 4966
4967
4968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4965.373 kb on + strand, within Xcc-8004.5229.1 at 4965.373 kb on + strand, within Xcc-8004.5229.1 at 4965.502 kb on + strand, within Xcc-8004.5229.1 at 4965.502 kb on + strand, within Xcc-8004.5229.1 at 4965.502 kb on + strand, within Xcc-8004.5229.1 at 4965.502 kb on + strand, within Xcc-8004.5229.1 at 4965.502 kb on + strand, within Xcc-8004.5229.1 at 4965.503 kb on - strand, within Xcc-8004.5229.1 at 4965.503 kb on - strand, within Xcc-8004.5229.1 at 4965.519 kb on + strand, within Xcc-8004.5229.1 at 4965.529 kb on + strand, within Xcc-8004.5229.1 at 4965.565 kb on + strand, within Xcc-8004.5229.1 at 4965.565 kb on + strand, within Xcc-8004.5229.1 at 4965.565 kb on + strand, within Xcc-8004.5229.1 at 4965.565 kb on + strand, within Xcc-8004.5229.1 at 4965.565 kb on + strand, within Xcc-8004.5229.1 at 4965.566 kb on - strand, within Xcc-8004.5229.1 at 4965.566 kb on - strand, within Xcc-8004.5229.1 at 4965.566 kb on - strand, within Xcc-8004.5229.1 at 4965.566 kb on - strand, within Xcc-8004.5229.1 at 4965.566 kb on - strand, within Xcc-8004.5229.1 at 4965.661 kb on + strand, within Xcc-8004.5229.1 at 4965.661 kb on + strand, within Xcc-8004.5229.1 at 4965.662 kb on - strand, within Xcc-8004.5229.1 at 4965.662 kb on - strand, within Xcc-8004.5229.1 at 4965.662 kb on - strand, within Xcc-8004.5229.1 at 4965.662 kb on - strand, within Xcc-8004.5229.1 at 4965.678 kb on + strand, within Xcc-8004.5229.1 at 4965.678 kb on + strand, within Xcc-8004.5229.1 at 4965.678 kb on + strand, within Xcc-8004.5229.1 at 4965.701 kb on - strand, within Xcc-8004.5229.1 at 4965.701 kb on - strand, within Xcc-8004.5229.1 at 4965.811 kb on + strand, within Xcc-8004.5229.1 at 4965.811 kb on + strand, within Xcc-8004.5229.1 at 4965.812 kb on - strand, within Xcc-8004.5229.1 at 4965.812 kb on - strand, within Xcc-8004.5229.1 at 4965.812 kb on - strand, within Xcc-8004.5229.1 at 4965.852 kb on + strand, within Xcc-8004.5229.1 at 4965.887 kb on - strand, within Xcc-8004.5229.1 at 4965.887 kb on - strand, within Xcc-8004.5229.1 at 4965.887 kb on - strand, within Xcc-8004.5229.1 at 4965.887 kb on - strand, within Xcc-8004.5229.1 at 4966.036 kb on + strand, within Xcc-8004.5229.1 at 4966.126 kb on + strand at 4966.126 kb on + strand at 4966.127 kb on - strand at 4966.127 kb on - strand at 4966.127 kb on - strand at 4966.127 kb on - strand at 4966.220 kb on - strand at 4966.245 kb on + strand at 4966.246 kb on - strand at 4966.246 kb on - strand at 4966.246 kb on - strand at 4966.306 kb on + strand at 4966.418 kb on + strand at 4966.418 kb on + strand at 4966.419 kb on - strand at 4966.419 kb on - strand at 4966.419 kb on - strand at 4966.419 kb on - strand at 4966.700 kb on + strand, within Xcc-8004.5230.1 at 4966.700 kb on + strand, within Xcc-8004.5230.1 at 4966.700 kb on + strand, within Xcc-8004.5230.1 at 4966.701 kb on - strand, within Xcc-8004.5230.1 at 4966.701 kb on - strand, within Xcc-8004.5230.1 at 4966.701 kb on - strand, within Xcc-8004.5230.1 at 4966.701 kb on - strand, within Xcc-8004.5230.1 at 4966.701 kb on - strand, within Xcc-8004.5230.1 at 4966.793 kb on + strand, within Xcc-8004.5230.1 at 4967.108 kb on - strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.132 kb on + strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.133 kb on - strand, within Xcc-8004.5230.1 at 4967.329 kb on - strand at 4967.391 kb on + strand at 4967.443 kb on + strand at 4967.470 kb on + strand at 4967.471 kb on - strand at 4967.477 kb on - strand at 4967.538 kb on + strand at 4967.538 kb on + strand at 4967.538 kb on + strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.539 kb on - strand at 4967.565 kb on + strand at 4967.565 kb on + strand at 4967.566 kb on - strand at 4967.566 kb on - strand at 4967.613 kb on + strand at 4967.613 kb on + strand at 4967.614 kb on - strand at 4967.614 kb on - strand at 4967.614 kb on - strand at 4967.617 kb on + strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.618 kb on - strand at 4967.619 kb on + strand at 4967.620 kb on - strand at 4967.620 kb on - strand at 4967.674 kb on - strand at 4967.695 kb on + strand at 4967.695 kb on + strand at 4967.695 kb on + strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.696 kb on - strand at 4967.700 kb on + strand at 4967.727 kb on + strand at 4967.894 kb on - strand, within Xcc-8004.5231.1 at 4967.927 kb on - strand, within Xcc-8004.5231.1 at 4967.927 kb on - strand, within Xcc-8004.5231.1 at 4967.937 kb on + strand, within Xcc-8004.5231.1 at 4967.946 kb on - strand, within Xcc-8004.5231.1 at 4967.975 kb on + strand at 4967.975 kb on + strand at 4968.091 kb on + strand, within Xcc-8004.5232.1 at 4968.092 kb on - strand, within Xcc-8004.5232.1 at 4968.092 kb on - strand, within Xcc-8004.5232.1 at 4968.098 kb on + strand, within Xcc-8004.5232.1 at 4968.098 kb on + strand, within Xcc-8004.5232.1 at 4968.099 kb on - strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.230 kb on + strand, within Xcc-8004.5232.1 at 4968.236 kb on - strand, within Xcc-8004.5232.1 at 4968.244 kb on + strand, within Xcc-8004.5232.1 at 4968.288 kb on + strand at 4968.288 kb on + strand at 4968.288 kb on + strand at 4968.289 kb on - strand at 4968.289 kb on - strand at 4968.290 kb on + strand at 4968.291 kb on - strand at 4968.312 kb on + strand at 4968.312 kb on + strand at 4968.312 kb on + strand at 4968.313 kb on - strand at 4968.313 kb on - strand at 4968.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 4,965,373 + Xcc-8004.5229.1 0.20 -0.1 4,965,373 + Xcc-8004.5229.1 0.20 +1.5 4,965,502 + Xcc-8004.5229.1 0.32 -1.5 4,965,502 + Xcc-8004.5229.1 0.32 +0.6 4,965,502 + Xcc-8004.5229.1 0.32 -0.5 4,965,502 + Xcc-8004.5229.1 0.32 -1.1 4,965,502 + Xcc-8004.5229.1 0.32 -3.0 4,965,503 - Xcc-8004.5229.1 0.32 -2.2 4,965,503 - Xcc-8004.5229.1 0.32 -0.8 4,965,519 + Xcc-8004.5229.1 0.34 -1.2 4,965,529 + Xcc-8004.5229.1 0.35 +0.0 4,965,565 + Xcc-8004.5229.1 0.38 -0.3 4,965,565 + Xcc-8004.5229.1 0.38 +0.5 4,965,565 + Xcc-8004.5229.1 0.38 -1.2 4,965,565 + Xcc-8004.5229.1 0.38 -0.5 4,965,565 + Xcc-8004.5229.1 0.38 -0.8 4,965,566 - Xcc-8004.5229.1 0.38 -0.8 4,965,566 - Xcc-8004.5229.1 0.38 -1.0 4,965,566 - Xcc-8004.5229.1 0.38 +0.7 4,965,566 - Xcc-8004.5229.1 0.38 -1.8 4,965,566 - Xcc-8004.5229.1 0.38 +0.1 4,965,661 + Xcc-8004.5229.1 0.47 +0.2 4,965,661 + Xcc-8004.5229.1 0.47 -0.0 4,965,662 - Xcc-8004.5229.1 0.47 -0.0 4,965,662 - Xcc-8004.5229.1 0.47 -0.5 4,965,662 - Xcc-8004.5229.1 0.47 +1.8 4,965,662 - Xcc-8004.5229.1 0.47 +0.6 4,965,678 + Xcc-8004.5229.1 0.49 +1.4 4,965,678 + Xcc-8004.5229.1 0.49 -1.5 4,965,678 + Xcc-8004.5229.1 0.49 -1.0 4,965,701 - Xcc-8004.5229.1 0.51 +0.4 4,965,701 - Xcc-8004.5229.1 0.51 +0.3 4,965,811 + Xcc-8004.5229.1 0.61 -1.7 4,965,811 + Xcc-8004.5229.1 0.61 -0.6 4,965,812 - Xcc-8004.5229.1 0.61 +2.4 4,965,812 - Xcc-8004.5229.1 0.61 -1.1 4,965,812 - Xcc-8004.5229.1 0.61 -0.2 4,965,852 + Xcc-8004.5229.1 0.65 -0.4 4,965,887 - Xcc-8004.5229.1 0.68 +0.7 4,965,887 - Xcc-8004.5229.1 0.68 -0.5 4,965,887 - Xcc-8004.5229.1 0.68 -1.9 4,965,887 - Xcc-8004.5229.1 0.68 -3.3 4,966,036 + Xcc-8004.5229.1 0.82 -0.3 4,966,126 + -0.8 4,966,126 + +1.0 4,966,127 - +0.7 4,966,127 - +0.5 4,966,127 - -2.3 4,966,127 - +0.0 4,966,220 - -0.0 4,966,245 + +0.9 4,966,246 - +2.1 4,966,246 - +2.9 4,966,246 - +0.4 4,966,306 + +2.6 4,966,418 + +0.3 4,966,418 + +0.3 4,966,419 - -0.6 4,966,419 - +0.4 4,966,419 - +0.6 4,966,419 - -0.7 4,966,700 + Xcc-8004.5230.1 0.34 -0.2 4,966,700 + Xcc-8004.5230.1 0.34 +0.8 4,966,700 + Xcc-8004.5230.1 0.34 -0.7 4,966,701 - Xcc-8004.5230.1 0.34 -0.9 4,966,701 - Xcc-8004.5230.1 0.34 -0.9 4,966,701 - Xcc-8004.5230.1 0.34 -1.8 4,966,701 - Xcc-8004.5230.1 0.34 -0.0 4,966,701 - Xcc-8004.5230.1 0.34 +2.1 4,966,793 + Xcc-8004.5230.1 0.43 -2.7 4,967,108 - Xcc-8004.5230.1 0.73 +0.5 4,967,132 + Xcc-8004.5230.1 0.75 -0.9 4,967,132 + Xcc-8004.5230.1 0.75 -0.6 4,967,132 + Xcc-8004.5230.1 0.75 -1.0 4,967,133 - Xcc-8004.5230.1 0.75 +0.0 4,967,133 - Xcc-8004.5230.1 0.75 -2.2 4,967,133 - Xcc-8004.5230.1 0.75 -1.6 4,967,329 - +0.8 4,967,391 + +0.2 4,967,443 + +0.2 4,967,470 + +2.5 4,967,471 - +1.8 4,967,477 - +4.1 4,967,538 + +0.1 4,967,538 + -0.2 4,967,538 + +0.5 4,967,539 - +1.3 4,967,539 - -1.5 4,967,539 - -1.1 4,967,539 - -1.0 4,967,565 + -0.5 4,967,565 + -1.9 4,967,566 - +0.5 4,967,566 - -0.9 4,967,613 + -0.4 4,967,613 + +0.1 4,967,614 - +1.9 4,967,614 - +1.1 4,967,614 - -0.3 4,967,617 + +1.5 4,967,618 - +0.1 4,967,618 - -1.2 4,967,618 - +1.9 4,967,618 - -0.7 4,967,619 + -0.6 4,967,620 - -1.3 4,967,620 - +1.7 4,967,674 - +0.4 4,967,695 + -0.3 4,967,695 + -1.0 4,967,695 + -1.2 4,967,696 - -1.6 4,967,696 - +0.1 4,967,696 - -0.1 4,967,696 - +1.6 4,967,696 - -0.5 4,967,696 - +0.5 4,967,700 + -0.4 4,967,727 + +3.3 4,967,894 - Xcc-8004.5231.1 0.60 -0.6 4,967,927 - Xcc-8004.5231.1 0.74 -0.3 4,967,927 - Xcc-8004.5231.1 0.74 -1.3 4,967,937 + Xcc-8004.5231.1 0.79 -2.0 4,967,946 - Xcc-8004.5231.1 0.82 -1.2 4,967,975 + -0.7 4,967,975 + +1.3 4,968,091 + Xcc-8004.5232.1 0.34 +0.2 4,968,092 - Xcc-8004.5232.1 0.34 +0.4 4,968,092 - Xcc-8004.5232.1 0.34 +0.5 4,968,098 + Xcc-8004.5232.1 0.36 +1.2 4,968,098 + Xcc-8004.5232.1 0.36 -1.3 4,968,099 - Xcc-8004.5232.1 0.36 +0.5 4,968,230 + Xcc-8004.5232.1 0.76 -2.2 4,968,230 + Xcc-8004.5232.1 0.76 -0.5 4,968,230 + Xcc-8004.5232.1 0.76 +1.5 4,968,236 - Xcc-8004.5232.1 0.78 -2.3 4,968,244 + Xcc-8004.5232.1 0.80 -0.2 4,968,288 + +0.1 4,968,288 + -1.9 4,968,288 + -0.1 4,968,289 - -2.9 4,968,289 - +0.8 4,968,290 + -0.5 4,968,291 - -1.2 4,968,312 + -0.5 4,968,312 + -0.9 4,968,312 + +0.6 4,968,313 - -0.0 4,968,313 - +0.8 4,968,313 - +1.3
Or see this region's nucleotide sequence