Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4941.1 and Xcc-8004.4942.1 are separated by 125 nucleotides Xcc-8004.4942.1 and Xcc-8004.4944.1 overlap by 4 nucleotides Xcc-8004.4944.1 and Xcc-8004.4945.1 are separated by 100 nucleotides Xcc-8004.4945.1 and Xcc-8004.4946.1 are separated by 67 nucleotides
Xcc-8004.4941.1: Xcc-8004.4941.1 - FIG01210368: hypothetical protein, at 4,696,697 to 4,697,299
Xcc-8004.4941.1
Xcc-8004.4942.1: Xcc-8004.4942.1 - Two-component system regulatory protein, at 4,697,425 to 4,698,090
Xcc-8004.4942.1
Xcc-8004.4944.1: Xcc-8004.4944.1 - Two-component system sensor protein, at 4,698,087 to 4,699,295
Xcc-8004.4944.1
Xcc-8004.4945.1: Xcc-8004.4945.1 - FIG01210349: hypothetical protein, at 4,699,396 to 4,699,683
Xcc-8004.4945.1
Xcc-8004.4946.1: Xcc-8004.4946.1 - FIG01211911: hypothetical protein, at 4,699,751 to 4,700,413
Xcc-8004.4946.1
Position (kb) 4698
4699
4700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.239 kb on + strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.240 kb on - strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.241 kb on + strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.242 kb on - strand at 4697.294 kb on + strand at 4697.352 kb on + strand at 4697.352 kb on + strand at 4697.352 kb on + strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.353 kb on - strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.355 kb on + strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.356 kb on - strand at 4697.364 kb on - strand at 4697.364 kb on - strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.473 kb on + strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.474 kb on - strand at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.557 kb on + strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.558 kb on - strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.617 kb on + strand, within Xcc-8004.4942.1 at 4697.618 kb on - strand, within Xcc-8004.4942.1 at 4697.618 kb on - strand, within Xcc-8004.4942.1 at 4697.632 kb on + strand, within Xcc-8004.4942.1 at 4697.632 kb on + strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.633 kb on - strand, within Xcc-8004.4942.1 at 4697.640 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.716 kb on + strand, within Xcc-8004.4942.1 at 4697.717 kb on - strand, within Xcc-8004.4942.1 at 4697.717 kb on - strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.959 kb on + strand, within Xcc-8004.4942.1 at 4697.960 kb on - strand, within Xcc-8004.4942.1 at 4697.960 kb on - strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.001 kb on + strand, within Xcc-8004.4942.1 at 4698.002 kb on - strand, within Xcc-8004.4942.1 at 4698.002 kb on - strand, within Xcc-8004.4942.1 at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.052 kb on + strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.053 kb on - strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.064 kb on + strand at 4698.065 kb on - strand at 4698.065 kb on - strand at 4698.396 kb on - strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.666 kb on + strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.667 kb on - strand, within Xcc-8004.4944.1 at 4698.749 kb on + strand, within Xcc-8004.4944.1 at 4698.750 kb on - strand, within Xcc-8004.4944.1 at 4698.813 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.850 kb on + strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1 at 4698.851 kb on - strand, within Xcc-8004.4944.1 at 4699.122 kb on + strand, within Xcc-8004.4944.1 at 4699.123 kb on - strand, within Xcc-8004.4944.1 at 4699.215 kb on + strand at 4699.215 kb on + strand at 4699.216 kb on - strand at 4699.216 kb on - strand at 4699.216 kb on - strand at 4699.216 kb on - strand at 4699.335 kb on + strand at 4699.336 kb on - strand at 4699.357 kb on + strand at 4699.357 kb on + strand at 4699.358 kb on - strand at 4699.358 kb on - strand at 4699.474 kb on - strand, within Xcc-8004.4945.1 at 4699.742 kb on + strand at 4699.742 kb on + strand at 4699.742 kb on + strand at 4699.743 kb on - strand at 4699.743 kb on - strand at 4699.750 kb on + strand at 4699.750 kb on + strand at 4699.750 kb on + strand at 4699.750 kb on + strand at 4699.750 kb on + strand at 4699.750 kb on + strand at 4699.751 kb on - strand at 4699.751 kb on - strand at 4699.751 kb on - strand at 4699.751 kb on - strand at 4699.751 kb on - strand at 4699.751 kb on - strand at 4699.807 kb on - strand at 4699.838 kb on + strand, within Xcc-8004.4946.1 at 4699.840 kb on + strand, within Xcc-8004.4946.1 at 4699.840 kb on + strand, within Xcc-8004.4946.1 at 4699.863 kb on - strand, within Xcc-8004.4946.1 at 4699.904 kb on + strand, within Xcc-8004.4946.1 at 4699.910 kb on + strand, within Xcc-8004.4946.1 at 4699.911 kb on - strand, within Xcc-8004.4946.1 at 4699.970 kb on + strand, within Xcc-8004.4946.1 at 4699.971 kb on - strand, within Xcc-8004.4946.1 at 4699.971 kb on - strand, within Xcc-8004.4946.1 at 4699.971 kb on - strand, within Xcc-8004.4946.1 at 4700.001 kb on + strand, within Xcc-8004.4946.1 at 4700.033 kb on + strand, within Xcc-8004.4946.1 at 4700.033 kb on + strand, within Xcc-8004.4946.1 at 4700.034 kb on - strand, within Xcc-8004.4946.1 at 4700.192 kb on + strand, within Xcc-8004.4946.1 at 4700.192 kb on + strand, within Xcc-8004.4946.1 at 4700.192 kb on + strand, within Xcc-8004.4946.1 at 4700.192 kb on + strand, within Xcc-8004.4946.1 at 4700.250 kb on - strand, within Xcc-8004.4946.1 at 4700.250 kb on - strand, within Xcc-8004.4946.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 4,697,239 + -0.7 4,697,239 + -0.9 4,697,239 + -1.2 4,697,239 + -1.5 4,697,239 + -1.7 4,697,239 + -0.4 4,697,240 - +1.3 4,697,240 - -2.3 4,697,240 - +0.6 4,697,240 - +0.3 4,697,241 + -0.5 4,697,241 + -0.9 4,697,241 + -0.1 4,697,241 + +0.7 4,697,241 + +0.1 4,697,241 + -0.8 4,697,241 + +0.5 4,697,241 + -0.3 4,697,242 - +3.8 4,697,242 - -1.7 4,697,242 - -1.4 4,697,242 - -0.9 4,697,242 - -0.4 4,697,242 - -1.8 4,697,294 + +0.0 4,697,352 + +3.2 4,697,352 + +0.1 4,697,352 + +0.1 4,697,353 - -0.2 4,697,353 - -1.5 4,697,353 - -1.9 4,697,353 - -0.7 4,697,355 + +1.1 4,697,355 + -0.5 4,697,355 + +1.1 4,697,355 + -0.9 4,697,355 + -0.7 4,697,355 + -1.4 4,697,355 + +1.1 4,697,355 + -0.3 4,697,356 - +1.0 4,697,356 - -0.4 4,697,356 - +0.0 4,697,356 - -0.5 4,697,356 - +0.5 4,697,356 - +2.7 4,697,356 - -0.3 4,697,364 - -0.0 4,697,364 - -0.5 4,697,473 + -0.4 4,697,473 + -1.7 4,697,473 + +0.3 4,697,473 + -0.1 4,697,473 + -1.2 4,697,473 + -0.2 4,697,474 - +0.5 4,697,474 - -0.5 4,697,474 - -0.2 4,697,474 - -1.8 4,697,474 - -0.6 4,697,474 - -0.0 4,697,557 + Xcc-8004.4942.1 0.20 -0.5 4,697,557 + Xcc-8004.4942.1 0.20 -1.2 4,697,557 + Xcc-8004.4942.1 0.20 -0.3 4,697,557 + Xcc-8004.4942.1 0.20 +0.7 4,697,557 + Xcc-8004.4942.1 0.20 -1.2 4,697,557 + Xcc-8004.4942.1 0.20 -0.1 4,697,557 + Xcc-8004.4942.1 0.20 -1.7 4,697,558 - Xcc-8004.4942.1 0.20 -1.9 4,697,558 - Xcc-8004.4942.1 0.20 -0.9 4,697,558 - Xcc-8004.4942.1 0.20 +2.1 4,697,617 + Xcc-8004.4942.1 0.29 -0.1 4,697,617 + Xcc-8004.4942.1 0.29 +0.2 4,697,617 + Xcc-8004.4942.1 0.29 +1.2 4,697,618 - Xcc-8004.4942.1 0.29 -1.0 4,697,618 - Xcc-8004.4942.1 0.29 +0.4 4,697,632 + Xcc-8004.4942.1 0.31 +2.0 4,697,632 + Xcc-8004.4942.1 0.31 -0.0 4,697,633 - Xcc-8004.4942.1 0.31 -1.5 4,697,633 - Xcc-8004.4942.1 0.31 +0.1 4,697,633 - Xcc-8004.4942.1 0.31 -0.2 4,697,633 - Xcc-8004.4942.1 0.31 -1.8 4,697,633 - Xcc-8004.4942.1 0.31 -1.4 4,697,633 - Xcc-8004.4942.1 0.31 +0.3 4,697,640 + Xcc-8004.4942.1 0.32 +0.2 4,697,716 + Xcc-8004.4942.1 0.44 +0.6 4,697,716 + Xcc-8004.4942.1 0.44 -0.9 4,697,716 + Xcc-8004.4942.1 0.44 +0.4 4,697,716 + Xcc-8004.4942.1 0.44 -1.0 4,697,716 + Xcc-8004.4942.1 0.44 -0.6 4,697,717 - Xcc-8004.4942.1 0.44 -0.1 4,697,717 - Xcc-8004.4942.1 0.44 +4.8 4,697,959 + Xcc-8004.4942.1 0.80 +0.4 4,697,959 + Xcc-8004.4942.1 0.80 -0.8 4,697,959 + Xcc-8004.4942.1 0.80 +1.4 4,697,959 + Xcc-8004.4942.1 0.80 -0.1 4,697,960 - Xcc-8004.4942.1 0.80 +0.2 4,697,960 - Xcc-8004.4942.1 0.80 +0.7 4,698,001 + Xcc-8004.4942.1 0.86 -0.3 4,698,001 + Xcc-8004.4942.1 0.86 -0.2 4,698,001 + Xcc-8004.4942.1 0.86 -0.9 4,698,002 - Xcc-8004.4942.1 0.87 -0.8 4,698,002 - Xcc-8004.4942.1 0.87 -0.9 4,698,052 + -0.4 4,698,052 + +0.2 4,698,052 + +1.2 4,698,052 + -0.9 4,698,052 + +0.2 4,698,052 + -0.4 4,698,052 + +1.8 4,698,053 - +3.1 4,698,053 - -2.0 4,698,053 - +0.5 4,698,053 - -1.2 4,698,053 - -3.0 4,698,053 - +0.4 4,698,053 - +0.6 4,698,064 + -2.2 4,698,064 + -0.1 4,698,064 + -0.1 4,698,064 + +1.1 4,698,065 - +1.9 4,698,065 - -4.0 4,698,396 - Xcc-8004.4944.1 0.26 +2.1 4,698,666 + Xcc-8004.4944.1 0.48 -1.9 4,698,666 + Xcc-8004.4944.1 0.48 +2.0 4,698,666 + Xcc-8004.4944.1 0.48 -2.2 4,698,667 - Xcc-8004.4944.1 0.48 +0.9 4,698,667 - Xcc-8004.4944.1 0.48 -0.6 4,698,667 - Xcc-8004.4944.1 0.48 -1.1 4,698,749 + Xcc-8004.4944.1 0.55 -0.0 4,698,750 - Xcc-8004.4944.1 0.55 -1.1 4,698,813 + Xcc-8004.4944.1 0.60 -0.3 4,698,850 + Xcc-8004.4944.1 0.63 +0.3 4,698,850 + Xcc-8004.4944.1 0.63 -0.2 4,698,850 + Xcc-8004.4944.1 0.63 +0.1 4,698,850 + Xcc-8004.4944.1 0.63 -0.6 4,698,850 + Xcc-8004.4944.1 0.63 -0.9 4,698,850 + Xcc-8004.4944.1 0.63 -0.2 4,698,851 - Xcc-8004.4944.1 0.63 -0.2 4,698,851 - Xcc-8004.4944.1 0.63 -0.3 4,698,851 - Xcc-8004.4944.1 0.63 +0.1 4,699,122 + Xcc-8004.4944.1 0.86 +0.1 4,699,123 - Xcc-8004.4944.1 0.86 -1.5 4,699,215 + -0.8 4,699,215 + +0.4 4,699,216 - -0.9 4,699,216 - -1.1 4,699,216 - -1.2 4,699,216 - +0.6 4,699,335 + -0.0 4,699,336 - -0.8 4,699,357 + +1.7 4,699,357 + +0.6 4,699,358 - -0.0 4,699,358 - -0.2 4,699,474 - Xcc-8004.4945.1 0.27 +0.6 4,699,742 + +1.5 4,699,742 + -0.9 4,699,742 + +2.1 4,699,743 - -0.4 4,699,743 - -1.9 4,699,750 + -0.9 4,699,750 + +0.6 4,699,750 + -0.8 4,699,750 + +0.1 4,699,750 + +0.6 4,699,750 + -0.2 4,699,751 - -0.4 4,699,751 - -0.9 4,699,751 - -0.9 4,699,751 - -0.8 4,699,751 - -2.4 4,699,751 - +2.1 4,699,807 - +0.1 4,699,838 + Xcc-8004.4946.1 0.13 -1.7 4,699,840 + Xcc-8004.4946.1 0.13 -1.2 4,699,840 + Xcc-8004.4946.1 0.13 +0.4 4,699,863 - Xcc-8004.4946.1 0.17 +0.0 4,699,904 + Xcc-8004.4946.1 0.23 +1.0 4,699,910 + Xcc-8004.4946.1 0.24 -0.4 4,699,911 - Xcc-8004.4946.1 0.24 -0.1 4,699,970 + Xcc-8004.4946.1 0.33 -2.0 4,699,971 - Xcc-8004.4946.1 0.33 -0.6 4,699,971 - Xcc-8004.4946.1 0.33 +0.1 4,699,971 - Xcc-8004.4946.1 0.33 +0.4 4,700,001 + Xcc-8004.4946.1 0.38 -0.3 4,700,033 + Xcc-8004.4946.1 0.43 -0.2 4,700,033 + Xcc-8004.4946.1 0.43 -2.5 4,700,034 - Xcc-8004.4946.1 0.43 +0.7 4,700,192 + Xcc-8004.4946.1 0.67 +0.9 4,700,192 + Xcc-8004.4946.1 0.67 +1.8 4,700,192 + Xcc-8004.4946.1 0.67 -1.1 4,700,192 + Xcc-8004.4946.1 0.67 +1.3 4,700,250 - Xcc-8004.4946.1 0.75 +0.1 4,700,250 - Xcc-8004.4946.1 0.75 +0.1
Or see this region's nucleotide sequence