Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4836.1

Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4835.1 and Xcc-8004.4836.1 are separated by 19 nucleotidesXcc-8004.4836.1 and Xcc-8004.4838.1 are separated by 2 nucleotides Xcc-8004.4835.1: Xcc-8004.4835.1 - Disulphide-isomerase, at 4,600,387 to 4,601,964 Xcc-8004.4835.1 Xcc-8004.4836.1: Xcc-8004.4836.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,601,984 to 4,602,880 Xcc-8004.4836.1 Xcc-8004.4838.1: Xcc-8004.4838.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,602,883 to 4,604,046 Xcc-8004.4838.1 Position (kb) 4601 4602 4603Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.435 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.575 kb on + strand, within Xcc-8004.4835.1at 4601.575 kb on + strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.814 kb on + strandat 4602.045 kb on + strandat 4602.156 kb on + strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.241 kb on + strand, within Xcc-8004.4836.1at 4602.486 kb on + strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.623 kb on + strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.731 kb on - strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.759 kb on - strand, within Xcc-8004.4836.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.178 kb on + strand, within Xcc-8004.4838.1at 4603.179 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.409 kb on - strand, within Xcc-8004.4838.1at 4603.582 kb on - strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,601,177 - Xcc-8004.4835.1 0.50 +3.1
4,601,177 - Xcc-8004.4835.1 0.50 +0.7
4,601,177 - Xcc-8004.4835.1 0.50 +0.4
4,601,177 - Xcc-8004.4835.1 0.50 +0.1
4,601,269 + Xcc-8004.4835.1 0.56 -1.1
4,601,269 + Xcc-8004.4835.1 0.56 -1.0
4,601,269 + Xcc-8004.4835.1 0.56 +0.0
4,601,269 + Xcc-8004.4835.1 0.56 +0.4
4,601,270 - Xcc-8004.4835.1 0.56 +0.4
4,601,270 - Xcc-8004.4835.1 0.56 -0.4
4,601,270 - Xcc-8004.4835.1 0.56 +0.8
4,601,435 + Xcc-8004.4835.1 0.66 +0.1
4,601,569 + Xcc-8004.4835.1 0.75 -0.7
4,601,569 + Xcc-8004.4835.1 0.75 -2.6
4,601,569 + Xcc-8004.4835.1 0.75 +1.1
4,601,572 + Xcc-8004.4835.1 0.75 +0.8
4,601,572 + Xcc-8004.4835.1 0.75 -2.1
4,601,572 + Xcc-8004.4835.1 0.75 -0.7
4,601,572 + Xcc-8004.4835.1 0.75 +0.3
4,601,572 + Xcc-8004.4835.1 0.75 -0.7
4,601,573 - Xcc-8004.4835.1 0.75 -1.8
4,601,573 - Xcc-8004.4835.1 0.75 +0.9
4,601,573 - Xcc-8004.4835.1 0.75 +1.3
4,601,573 - Xcc-8004.4835.1 0.75 -1.3
4,601,575 + Xcc-8004.4835.1 0.75 -1.0
4,601,575 + Xcc-8004.4835.1 0.75 +1.7
4,601,576 - Xcc-8004.4835.1 0.75 -1.4
4,601,576 - Xcc-8004.4835.1 0.75 +1.1
4,601,576 - Xcc-8004.4835.1 0.75 -3.0
4,601,576 - Xcc-8004.4835.1 0.75 -1.2
4,601,576 - Xcc-8004.4835.1 0.75 -1.7
4,601,576 - Xcc-8004.4835.1 0.75 -0.4
4,601,576 - Xcc-8004.4835.1 0.75 +1.7
4,601,650 + Xcc-8004.4835.1 0.80 +0.1
4,601,650 + Xcc-8004.4835.1 0.80 +1.5
4,601,650 + Xcc-8004.4835.1 0.80 +0.2
4,601,650 + Xcc-8004.4835.1 0.80 +0.8
4,601,650 + Xcc-8004.4835.1 0.80 -1.6
4,601,651 - Xcc-8004.4835.1 0.80 +0.1
4,601,651 - Xcc-8004.4835.1 0.80 -1.2
4,601,651 - Xcc-8004.4835.1 0.80 +1.5
4,601,651 - Xcc-8004.4835.1 0.80 -1.5
4,601,814 + -1.4
4,602,045 + -1.7
4,602,156 + Xcc-8004.4836.1 0.19 -0.9
4,602,157 - Xcc-8004.4836.1 0.19 -1.2
4,602,157 - Xcc-8004.4836.1 0.19 -1.1
4,602,157 - Xcc-8004.4836.1 0.19 +2.1
4,602,220 - Xcc-8004.4836.1 0.26 -1.9
4,602,220 - Xcc-8004.4836.1 0.26 -2.6
4,602,220 - Xcc-8004.4836.1 0.26 +0.1
4,602,241 + Xcc-8004.4836.1 0.29 -0.8
4,602,486 + Xcc-8004.4836.1 0.56 -0.7
4,602,487 - Xcc-8004.4836.1 0.56 -0.7
4,602,487 - Xcc-8004.4836.1 0.56 +0.1
4,602,495 + Xcc-8004.4836.1 0.57 +0.1
4,602,495 + Xcc-8004.4836.1 0.57 -0.2
4,602,623 + Xcc-8004.4836.1 0.71 -1.9
4,602,624 - Xcc-8004.4836.1 0.71 -1.2
4,602,624 - Xcc-8004.4836.1 0.71 -1.0
4,602,690 - Xcc-8004.4836.1 0.79 -1.6
4,602,690 - Xcc-8004.4836.1 0.79 -1.4
4,602,731 - Xcc-8004.4836.1 0.83 -0.4
4,602,758 + Xcc-8004.4836.1 0.86 +1.9
4,602,758 + Xcc-8004.4836.1 0.86 -0.4
4,602,759 - Xcc-8004.4836.1 0.86 +0.1
4,603,097 + Xcc-8004.4838.1 0.18 -0.3
4,603,097 + Xcc-8004.4838.1 0.18 -1.3
4,603,097 + Xcc-8004.4838.1 0.18 -0.7
4,603,098 - Xcc-8004.4838.1 0.18 -1.8
4,603,098 - Xcc-8004.4838.1 0.18 -1.8
4,603,098 - Xcc-8004.4838.1 0.18 +0.6
4,603,178 + Xcc-8004.4838.1 0.25 -0.9
4,603,179 - Xcc-8004.4838.1 0.25 -1.5
4,603,305 - Xcc-8004.4838.1 0.36 +0.5
4,603,305 - Xcc-8004.4838.1 0.36 +0.3
4,603,305 - Xcc-8004.4838.1 0.36 +1.3
4,603,408 + Xcc-8004.4838.1 0.45 +0.4
4,603,408 + Xcc-8004.4838.1 0.45 +0.5
4,603,408 + Xcc-8004.4838.1 0.45 -0.7
4,603,408 + Xcc-8004.4838.1 0.45 -1.5
4,603,409 - Xcc-8004.4838.1 0.45 -1.7
4,603,582 - Xcc-8004.4838.1 0.60 -1.2
4,603,667 + Xcc-8004.4838.1 0.67 +0.5
4,603,667 + Xcc-8004.4838.1 0.67 -0.9
4,603,667 + Xcc-8004.4838.1 0.67 -0.2
4,603,667 + Xcc-8004.4838.1 0.67 -1.1
4,603,667 + Xcc-8004.4838.1 0.67 -0.6
4,603,667 + Xcc-8004.4838.1 0.67 -0.6
4,603,668 - Xcc-8004.4838.1 0.67 -0.5
4,603,668 - Xcc-8004.4838.1 0.67 -0.9
4,603,668 - Xcc-8004.4838.1 0.67 +0.4
4,603,668 - Xcc-8004.4838.1 0.67 +1.1
4,603,668 - Xcc-8004.4838.1 0.67 +1.9
4,603,668 - Xcc-8004.4838.1 0.67 -1.0
4,603,668 - Xcc-8004.4838.1 0.67 +0.4
4,603,668 - Xcc-8004.4838.1 0.67 -0.7
4,603,668 - Xcc-8004.4838.1 0.67 -0.5
4,603,849 + Xcc-8004.4838.1 0.83 +0.0
4,603,849 + Xcc-8004.4838.1 0.83 -1.9

Or see this region's nucleotide sequence