Experiment: 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.399.1 and Xcc-8004.400.1 are separated by 115 nucleotides Xcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotides Xcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides
Xcc-8004.399.1: Xcc-8004.399.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 385,999 to 386,871
Xcc-8004.399.1
Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892
Xcc-8004.400.1
Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583
Xcc-8004.401.1
Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772
Xcc-8004.402.1
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.033 kb on + strand at 386.078 kb on + strand at 386.078 kb on + strand at 386.079 kb on - strand at 386.079 kb on - strand at 386.187 kb on - strand, within Xcc-8004.399.1 at 386.235 kb on + strand, within Xcc-8004.399.1 at 386.235 kb on - strand, within Xcc-8004.399.1 at 386.825 kb on + strand at 386.826 kb on - strand at 386.826 kb on - strand at 386.826 kb on - strand at 387.048 kb on + strand at 387.062 kb on - strand at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.147 kb on + strand, within Xcc-8004.400.1 at 387.229 kb on + strand, within Xcc-8004.400.1 at 387.277 kb on + strand, within Xcc-8004.400.1 at 387.277 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.279 kb on + strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.280 kb on - strand, within Xcc-8004.400.1 at 387.284 kb on - strand, within Xcc-8004.400.1 at 387.351 kb on + strand, within Xcc-8004.400.1 at 387.352 kb on - strand, within Xcc-8004.400.1 at 387.402 kb on + strand, within Xcc-8004.400.1 at 387.403 kb on - strand, within Xcc-8004.400.1 at 387.438 kb on + strand, within Xcc-8004.400.1 at 387.439 kb on - strand, within Xcc-8004.400.1 at 387.553 kb on - strand, within Xcc-8004.400.1 at 387.582 kb on + strand, within Xcc-8004.400.1 at 387.703 kb on - strand, within Xcc-8004.400.1 at 387.703 kb on - strand, within Xcc-8004.400.1 at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 388.252 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.461 kb on + strand, within Xcc-8004.401.1 at 388.805 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 386,033 + -0.7 386,078 + +0.2 386,078 + -0.4 386,079 - -0.9 386,079 - -0.8 386,187 - Xcc-8004.399.1 0.22 +0.3 386,235 + Xcc-8004.399.1 0.27 +0.8 386,235 - Xcc-8004.399.1 0.27 -0.7 386,825 + -1.0 386,826 - +0.7 386,826 - -0.5 386,826 - +0.9 387,048 + +0.0 387,062 - +2.6 387,147 + Xcc-8004.400.1 0.18 -2.9 387,147 + Xcc-8004.400.1 0.18 -1.1 387,147 + Xcc-8004.400.1 0.18 -1.5 387,147 + Xcc-8004.400.1 0.18 -1.1 387,147 + Xcc-8004.400.1 0.18 -0.8 387,147 + Xcc-8004.400.1 0.18 +1.2 387,229 + Xcc-8004.400.1 0.27 +0.3 387,277 + Xcc-8004.400.1 0.32 -0.3 387,277 + Xcc-8004.400.1 0.32 -0.2 387,279 + Xcc-8004.400.1 0.32 -2.7 387,279 + Xcc-8004.400.1 0.32 -0.4 387,279 + Xcc-8004.400.1 0.32 +0.4 387,279 + Xcc-8004.400.1 0.32 -0.7 387,279 + Xcc-8004.400.1 0.32 +0.5 387,279 + Xcc-8004.400.1 0.32 -1.4 387,279 + Xcc-8004.400.1 0.32 -0.5 387,280 - Xcc-8004.400.1 0.32 +0.3 387,280 - Xcc-8004.400.1 0.32 +0.2 387,280 - Xcc-8004.400.1 0.32 -1.2 387,280 - Xcc-8004.400.1 0.32 -0.5 387,280 - Xcc-8004.400.1 0.32 -1.4 387,280 - Xcc-8004.400.1 0.32 -2.8 387,280 - Xcc-8004.400.1 0.32 -3.4 387,280 - Xcc-8004.400.1 0.32 -0.2 387,280 - Xcc-8004.400.1 0.32 +0.6 387,284 - Xcc-8004.400.1 0.33 -2.4 387,351 + Xcc-8004.400.1 0.40 -1.2 387,352 - Xcc-8004.400.1 0.40 +1.9 387,402 + Xcc-8004.400.1 0.46 +1.7 387,403 - Xcc-8004.400.1 0.46 +0.2 387,438 + Xcc-8004.400.1 0.50 +1.2 387,439 - Xcc-8004.400.1 0.50 -1.7 387,553 - Xcc-8004.400.1 0.62 -0.7 387,582 + Xcc-8004.400.1 0.66 -0.1 387,703 - Xcc-8004.400.1 0.79 -2.8 387,703 - Xcc-8004.400.1 0.79 -2.7 387,935 + +0.9 387,956 + +0.8 387,956 + -0.7 387,956 + +1.3 387,956 + +1.6 387,956 + +0.9 387,956 + +1.2 387,956 + -0.0 387,956 + -0.4 387,956 + +0.4 387,956 + +1.2 387,956 + +1.5 387,956 + +0.7 387,956 + +0.9 387,956 + +0.2 387,957 - -1.3 387,957 - +0.3 387,957 - -1.8 387,957 - -1.2 387,957 - -2.9 387,957 - -0.7 387,957 - -0.4 387,957 - +0.4 387,977 + -0.6 387,977 + -0.2 387,977 + -1.3 387,977 + +0.7 387,978 - -2.5 387,978 - -2.5 387,978 - -2.9 387,978 - -1.7 387,978 - -0.2 387,978 - -2.2 388,252 - Xcc-8004.401.1 0.44 -0.4 388,435 - Xcc-8004.401.1 0.75 -1.4 388,435 - Xcc-8004.401.1 0.75 -2.2 388,461 + Xcc-8004.401.1 0.79 +2.2 388,805 - -1.2 388,821 + -0.8 388,821 + -2.5 388,826 - -1.7
Or see this region's nucleotide sequence